PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013625169.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 190aa    MW: 22058.1 Da    PI: 5.8758
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013625169.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.41.5e-1375124554
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                     +++rr+ +NRe+ArrsR RK+  ++eL   v+ L +eN++  ++l++ ++
  XP_013625169.1  75 RKQRRMVSNRESARRSRMRKQRHLDELLSQVAWLRSENHQILEKLNQASD 124
                     79**************************************9999998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.0E-1271135IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.5E-1073126No hitNo description
PROSITE profilePS5021710.28973121IPR004827Basic-leucine zipper domain
PfamPF001701.7E-1175132IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.06E-1275124No hitNo description
CDDcd147021.17E-1776123No hitNo description
PROSITE patternPS0003607893IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MHPNYDSSSI NNMQQQDYFH LNPYYNNLNP STNNNLNLLS YPQIQELNNL QSPASNNNST  60
TSDEATEETF VISERKQRRM VSNRESARRS RMRKQRHLDE LLSQVAWLRS ENHQILEKLN  120
QASDSNDLVL QENLSLKEEN LELQQVITSM KKLEGGSTSF RGRYCSSSLD HDLDQDFSCI  180
TNDPRTHHPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18794RRSRMRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013625169.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325540.0AC232554.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH013I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013625169.11e-137PREDICTED: basic leucine zipper 43-like
RefseqXP_013740201.11e-137basic leucine zipper 43
RefseqXP_022553803.11e-137basic leucine zipper 43-like
TrEMBLA0A0D3B1E21e-136A0A0D3B1E2_BRAOL; Uncharacterized protein
TrEMBLA0A3P6AAH01e-136A0A3P6AAH0_BRAOL; Uncharacterized protein
STRINGBo3g010750.11e-137(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106321532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15830.13e-74basic leucine-zipper 3