PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013625262.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 194aa    MW: 21231.4 Da    PI: 8.6953
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013625262.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.53.3e-393190261
          zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                    ++++l+cprC s ntkfCyynny+lsqPr+fCk+CrryWtkGG+lrn+PvGgg+rkn ++
  XP_013625262.1 31 EQEQLNCPRCASPNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGSLRNIPVGGGTRKNSSK 90
                    57899***************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027011.1E-323389IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.8263589IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103773IPR003851Zinc finger, Dof-type
ProDomPD0074785.0E-243786IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MQEDMTSAAA YYPHQSMIMT AKQQQQPELP EQEQLNCPRC ASPNTKFCYY NNYNLSQPRH  60
FCKNCRRYWT KGGSLRNIPV GGGTRKNSSK RSSVGSSSSS SSSSSPKSKT VAVSDQESRN  120
TGNSGQEMDP TRMLYGLPVG DPSGGSFSSL LVSNMQQIRG VNYETGSGWY PGMELGLGSG  180
IRRNDDAALT DEQN
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00199DAPTransfer from AT1G51700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013625262.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150342e-33AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013625262.11e-143PREDICTED: dof zinc finger protein DOF1.7-like
RefseqXP_013723626.11e-143dof zinc finger protein DOF1.7
SwissprotO821558e-86DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBLA0A078IVE41e-141A0A078IVE4_BRANA; BnaC03g77910D protein
TrEMBLA0A0D3BMQ31e-141A0A0D3BMQ3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6B4791e-141A0A3P6B479_BRAOL; Uncharacterized protein
STRINGBo3g181400.11e-142(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12692896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.13e-71DOF zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]