PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013625360.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 319aa MW: 35203.5 Da PI: 9.2651

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013625360.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.8	2.2e-09	179	226	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ +L+ l+P + +k Ka +L + ++Y++sLq XP_013625360.1 179 SHSLAERARREKISERMRTLQNLVPGC----DKVTGKALMLDEIINYVQSLQ 226 8***********************9....555***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.89E-17	173	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.94E-10	173	230	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.5E-17	175	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.707	175	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.9E-7	179	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.7E-10	181	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009739	Biological Process	response to gibberellin
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MSLLVLPTNK KTHSHKDKKS EASILQMASF SYFQHYPHSL LDPLLFSSPN SSTKLSGFIE 60 QNPLYPPPNI STIVDTSLNP FLDSFNVEKT ESSDVKKHIN TNATAALTSD QLSPGPSAGK 120 KQRRKTRNGS KSKEGVEGRK SKKPRNGSSS DVKEKRANEQ EPPKDYIHVR ARRGQATDSH 180 SLAERARREK ISERMRTLQN LVPGCDKVTG KALMLDEIIN YVQSLQNQVE FLSMKLASIS 240 PVVYDFGSDL DGIIVRPEIG SADVGTSFAN AMPTTTTNFS SLLDDSIIPA EAHLQEDGGE 300 REKIVDRSGF NNNSFCSFS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013625360.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013625360.1	0.0	PREDICTED: transcription factor bHLH137
Refseq	XP_013625365.1	0.0	PREDICTED: transcription factor bHLH137-like
Swissprot	Q93W88	1e-142	BH137_ARATH; Transcription factor bHLH137
TrEMBL	A0A0D3B423	0.0	A0A0D3B423_BRAOL; Uncharacterized protein
STRING	Bo3g024010.1	0.0	(Brassica oleracea)
STRING	Bo3g024020.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8796	24	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	1e-137	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]