PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013625409.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YA
Protein Properties Length: 258aa    MW: 28432.4 Da    PI: 8.4257
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013625409.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA958.8e-30159214158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQyq+Il+RR++Rak+e e+k+   ++kpylheSRhkhA+rR+R+sgGrF
  XP_013625409.1 159 QEPVYVNAKQYQGILRRRKARAKAELERKV--INKKPYLHESRHKHAMRRARASGGRF 214
                     69***************************9..899**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.0E-31157217IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.061158217IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.6E-26160214IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.6E-23161183IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860163183IPR018362CCAAT-binding factor, conserved site
PRINTSPR006167.6E-23191214IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MQSKSGSGNE VEVDHHADQQ PMMYAEPWWK KNNSFGVVPQ EIPSVMPSKS SSLESNDVHS  60
ASGDDGAWKD TQAATSSPSV DNHGVEGNDP AASVGNMHDH QQLVQPPELV GHYIACVPNP  120
YQDPYYGGMV GAYGHQQLGF RPYLGMPGER TALPLDMTQE PVYVNAKQYQ GILRRRKARA  180
KAELERKVIN KKPYLHESRH KHAMRRARAS GGRFAKKTEA EAAAERERKR ERGSATNSPG  240
SEPVETNSNE TLNSSRAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-15158222166NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198207RHKHAMRRAR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013625409.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013625409.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1
SwissprotQ9LXV51e-144NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBLA0A0D3B0V30.0A0A0D3B0V3_BRAOL; Uncharacterized protein
STRINGBo3g008860.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59462646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.31e-122nuclear factor Y, subunit A1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Siriwardana CL, et al.
    NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T.
    PLoS Genet., 2016. 12(12): p. e1006496
    [PMID:27977687]
  3. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]