PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013625434.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NF-YA

Protein Properties

Length: 265aa MW: 29290.1 Da PI: 10.2023

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013625434.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	92.3	6.1e-29	120	179	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRaklee...ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 ++YVN+KQy++I++RRq+Rak+++ ++k ++k rkpy+h+SRh hAlrRpRgsgGrF XP_013625434.1 120 GTIYVNSKQYHGIIRRRQSRAKAAAvldQNKPSSKFRKPYMHHSRHLHALRRPRGSGGRF 179 689*******************9999*****************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	7.6E-29	117	182	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	34.67	118	182	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.9E-23	121	179	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.8E-21	121	143	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.8E-21	156	179	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MAMQTMREGL PSAPQISWWN AFGSQPLTPE SLSGDNDSLA GVKVRSAGGI EQGDVKSPRV 60 VPKPHGSAFS MQPPYLELGF SQPQMYKKYP CVEQQYYGVL SPYGSHSSVM LPLNMETEDG 120 TIYVNSKQYH GIIRRRQSRA KAAAVLDQNK PSSKFRKPYM HHSRHLHALR RPRGSGGRFL 180 NTKSQNNAKK ADGTKQTQPQ QSNSQDSDVL HPENVTMNLS NRLGSEVTSM NYFLSSSVHP 240 LGGKVMPSKW ITAAAMDNGC CSFKT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_A	9e-15	122	182	5	62	HAPB protein
4g92_A	9e-15	122	182	5	62	HAPB protein
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269\|PubMed:11250072, ECO:0000269\|PubMed:9662544}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013625434.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC787679	0.0	KC787679.1 Brassica napus transcription factor subunit NF-YA2 (NF-YA2) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013625434.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-2-like isoform X2
Swissprot	Q9M9X4	1e-148	NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBL	A0A0D3B9V3	0.0	A0A0D3B9V3_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6B9F5	0.0	A0A3P6B9F5_BRAOL; Uncharacterized protein
TrEMBL	W6D5P7	0.0	W6D5P7_BRANA; Transcription factor subunit NF-YA2
STRING	Bo3g060160.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05690.1	1e-151	nuclear factor Y, subunit A2

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Nasim Z,Fahim M,Ahn JH Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay. Front Plant Sci, 2017. 8: p. 191 [PMID:28261246] Zhang M,Hu X,Zhu M,Xu M,Wang L Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis. Sci Rep, 2017. 7(1): p. 1395 [PMID:28469131]