PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013625673.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 369aa    MW: 42011.7 Da    PI: 6.6332
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013625673.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.31.8e-05250293855
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      Er R +ri + +  L +llP+      k  s   iL + v+++k Lq
  XP_013625673.1 250 TERERKQRIDDNIKALAKLLPHE----VKEDSSEVILNEIVDHVKLLQ 293
                     7*********************9....566999************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-7241301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-6241300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.578242292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MVPLLRQTGN GKSSEDLYLK ASLMNFNSVF QSLTELFPQI DARILRTVAR EHPTDADEAA  60
AVVISEVVPL FPQEWEDHVR KRILHHLPLC KEPETQHDDD ALSQWLHPSH LPQSYLALLN  120
EEEEEKATPD LKPLLDYAVK KVVLPSRDAA TGARREVRTI YSASNKTASS VVKPSIRVQS  180
QTNNEQLSGS SSKVPVAGRS QRKAAYPWSN YSEKLRSWKK RSSDFSQLHG QCKYVPSWQS  240
NQRKCKSYTT ERERKQRIDD NIKALAKLLP HEVKEDSSEV ILNEIVDHVK LLQLEMKELS  300
LNRLGGEPIS HPMTFIEGFG HYIHHEEMMT KPLEEMMEDL LANDPDAAAR LLESKGLYLM  360
PLSSVQELC
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013625673.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013625673.10.0PREDICTED: uncharacterized protein LOC106331805 isoform X2
TrEMBLA0A0D3BEW20.0A0A0D3BEW2_BRAOL; Uncharacterized protein
STRINGBo3g100520.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.12e-14LJRHL1-like 2