PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013625819.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 336aa MW: 38084 Da PI: 6.6007

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013625819.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.4	1.9e-55	21	148	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdee+++ yLk+kv ++++++ ++ e+d++k+ePwdLpk++k +eke yfF++rd+ky+tg r+nrat+sgyWkatgkdke+++ XP_013625819.1 21 LPPGFRFHPTDEEIISSYLKEKVLDSRFTA-VAMGEADLNKCEPWDLPKRAKMGEKEFYFFCQRDRKYPTGMRTNRATESGYWKATGKDKEIFKG 114 79***********************999.67***********99999*************************************9 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 kg lvg+kktLvfy+grap+gekt+Wvmheyrle XP_013625819.1 115 KGCLVGMKKTLVFYRGRAPRGEKTNWVMHEYRLE 148 ******************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.4E-61	18	173	IPR003441	NAC domain
PROSITE profile	PS51005	58.054	21	172	IPR003441	NAC domain
Pfam	PF02365	5.2E-29	22	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MAVVVESGVV LNHGGDELVD LPPGFRFHPT DEEIISSYLK EKVLDSRFTA VAMGEADLNK 60 CEPWDLPKRA KMGEKEFYFF CQRDRKYPTG MRTNRATESG YWKATGKDKE IFKGKGCLVG 120 MKKTLVFYRG RAPRGEKTNW VMHEYRLEGI YSYHNLPKTA RDDWVVCRVF HKNNPSTTTQ 180 QMTRIPMEDL ARTDSLENID HFLDFSSLPP LIDPSFTGQL NFKPINPPTY DISSPIQPHH 240 FNSSYQPIFN HQGFGSASGS GSTYNNNNNN KEMVKMEQSL VSVSQETCLS SDVNATTTAE 300 VSSGPVMKQE MSMMGMVNGS KSYEDLCDLR GILWDY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-52	19	174	15	167	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-52	19	174	15	167	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-52	19	174	15	167	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-52	19	174	15	167	NO APICAL MERISTEM PROTEIN
3swm_A	5e-52	19	174	18	170	NAC domain-containing protein 19
3swm_B	5e-52	19	174	18	170	NAC domain-containing protein 19
3swm_C	5e-52	19	174	18	170	NAC domain-containing protein 19
3swm_D	5e-52	19	174	18	170	NAC domain-containing protein 19
3swp_A	5e-52	19	174	18	170	NAC domain-containing protein 19
3swp_B	5e-52	19	174	18	170	NAC domain-containing protein 19
3swp_C	5e-52	19	174	18	170	NAC domain-containing protein 19
3swp_D	5e-52	19	174	18	170	NAC domain-containing protein 19
4dul_A	5e-52	19	174	15	167	NAC domain-containing protein 19
4dul_B	5e-52	19	174	15	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013625819.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP641357	0.0	KP641357.1 Brassica napus NAC transcription factor 87.1 (NAC87.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013625819.1	0.0	PREDICTED: NAC domain-containing protein 92-like
Swissprot	Q9FK44	0.0	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A0D3B1S3	0.0	A0A0D3B1S3_BRAOL; Uncharacterized protein
STRING	Bo3g013050.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2269	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.1	0.0	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]