PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013626140.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 183aa    MW: 19387.7 Da    PI: 10.0765
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013626140.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.15.2e-184478135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C+ Cgt  TplWR gp g+k+LCnaCG++ rkk++
  XP_013626140.1 44 CVDCGTLRTPLWRGGPAGPKSLCNACGIKSRKKRQ 78
                    *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.2E-113893IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.66E-123879No hitNo description
PROSITE profilePS5011412.3083892IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.6E-144278IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.72E-124393No hitNo description
PROSITE patternPS0034404469IPR000679Zinc finger, GATA-type
PfamPF003207.2E-164478IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MSEGSVESKS KVDSAGELSD VDNENCSSSG SGGGGSSGET KRTCVDCGTL RTPLWRGGPA  60
GPKSLCNACG IKSRKKRQAA LGIKPEEKKR NRKSNSSSDS DLSFDDHRDA KKKTNKGGDD  120
SSSSKRASNS SSSEGVSKYL DLGFKVPVMK RSAVEKKRLW KKLGEEERAA VLLMALSCGS  180
VFS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013626140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893172e-77AC189317.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036B21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626140.11e-126PREDICTED: GATA transcription factor 17-like
RefseqXP_013653360.11e-126GATA transcription factor 17
SwissprotQ9LIB56e-83GAT17_ARATH; GATA transcription factor 17
TrEMBLA0A0D3BBP51e-125A0A0D3BBP5_BRAOL; Uncharacterized protein
TrEMBLA0A3P6AVH61e-125A0A3P6AVH6_BRAOL; Uncharacterized protein
STRINGBo3g068560.11e-126(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM126431528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16870.13e-72GATA transcription factor 17
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]