PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013626148.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 240aa MW: 26700 Da PI: 7.8454

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013626148.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.7	2.1e-13	59	105	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+ +E+rRRdriNs ++ Lr+l+P + Kl+Ka+ L +++e +k+L XP_013626148.1 59 RSHSLAEKRRRDRINSHLSALRKLVPDS-----DKLDKAALLARVIEQVKEL 105 68***********************8.....7***********99988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.23E-14	53	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.567	56	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-14	59	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.3E-11	59	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.95E-13	59	108	No hit	No description
SMART	SM00353	9.4E-13	62	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MENSYDSAAA AKWFDSTSPY NMVSWSLQPG SSDSDLSRFN LGSSDELVGG KDRAESVSRS 60 HSLAEKRRRD RINSHLSALR KLVPDSDKLD KAALLARVIE QVKELKQEAK ESPIFQDLPT 120 EADEVTVLPE TISNEFNQDT TIFKASFCCP DQTEAISEIV SVLTKFKLET IQAEFICVGG 180 RIRINFIVKE TATTTSAKAL KQSLCAALNR ITSLTSSSTS SVCRIRSKRQ RWFLSSNYSQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013626148.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by salicylic acid (SA) treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013626148.1	1e-176	PREDICTED: transcription factor bHLH51
Refseq	XP_013646274.1	1e-176	transcription factor bHLH51-like
Refseq	XP_013716972.1	1e-176	transcription factor bHLH51-like
Swissprot	Q9XEF0	1e-116	BH051_ARATH; Transcription factor bHLH51
TrEMBL	A0A0D3B604	1e-175	A0A0D3B604_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6AQD4	1e-175	A0A3P6AQD4_BRAOL; Uncharacterized protein
STRING	Bo3g034790.1	1e-175	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6806	25	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40200.1	1e-117	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]