PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013626524.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 243aa    MW: 27071.8 Da    PI: 7.8771
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013626524.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.94.2e-0960106354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     r+h+e+ErrRR+riNs + +L  +l  +      K +Ka+ L k+v+ +k+L
  XP_013626524.1  60 RNHKEAERRRRERINSHLTKLCNVLSCN-----SKTDKATLLAKVVHRVKEL 106
                     58**********************9997.....7************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.18657106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-660106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-1260120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-1160118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-763112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MQPESSDQML YSFLTGNQIS GGGFCVSENY KSSSTSSYYP LAISGIGETL AQDRAIAALR  60
NHKEAERRRR ERINSHLTKL CNVLSCNSKT DKATLLAKVV HRVKELKQQT LEISDSDQTL  120
LPSETDEISV LHYGDYSNDG HIIFKASLCC DDRSDLLPDL MEILNSLHMK TLRAEMVTLG  180
GRTRNVLVVA ADKEMHGVQS VHFLQNALKS LLERSSKLLM ECSSGSGGER SKRRRALEHV  240
IMV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16570ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013626524.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1190590.0AK119059.1 Arabidopsis thaliana At2g41130 mRNA for putative bHLH transcription factor (bHLH106), complete cds, clone: RAFL21-40-D23.
GenBankAY0746390.0AY074639.1 Arabidopsis thaliana At2g41130/T3K9.10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626524.11e-180PREDICTED: transcription factor bHLH106-like
SwissprotO806741e-132BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A0D3B6661e-178A0A0D3B666_BRAOL; Uncharacterized protein
STRINGBo3g035410.11e-179(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36422762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.11e-115bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]