PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013626713.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 203aa    MW: 22536.3 Da    PI: 7.5424
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013626713.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.6e-12137182655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri  ++ +L+el+P+     +k  s a++L +Ave+Ik Lq
  XP_013626713.1 137 SIAERERRTRISGKLKKLQELVPNM----DKQTSYADMLDLAVEHIKGLQ 182
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.056131181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-14134195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.15E-10135186No hitNo description
Gene3DG3DSA:4.10.280.109.3E-13136193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-9137182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-12137187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MEEGTGFPQG RPNGKYGDGG ERVPSRLKSE LRFSGGGSSG HQEHNSEVEA PLAAINCVAS  60
TSMSFGNDHN SWDNSSSQIS FTIDEPGKRS KTTDFFTLET QFSMPQTSME MSMINIPEDS  120
VPWKVRAKRG CATHPRSIAE RERRTRISGK LKKLQELVPN MDKQTSYADM LDLAVEHIKG  180
LQHHIESLEK GMERCTCGAC KKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013626713.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626713.11e-152PREDICTED: transcription factor bHLH129-like
SwissprotQ9ZW815e-86BH129_ARATH; Transcription factor bHLH129
TrEMBLA0A0D3B6G51e-151A0A0D3B6G5_BRAOL; Uncharacterized protein
STRINGBo3g036400.11e-152(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103291833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43140.21e-101bHLH family protein