PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013626976.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YB
Protein Properties Length: 157aa    MW: 17904 Da    PI: 6.6752
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013626976.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB172.16.2e-5447142297
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                     +eq+r+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wa+a+lGf+dy+e+lk+yl++yr +ege
  XP_013626976.1  47 KEQERLLPIANVGRIMKNILPPNAKISKEAKETIQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWAMANLGFDDYAEQLKKYLNRYRVIEGE 141
                     89*******************************************************************************************99 PP

           NF-YB  97 k 97 
                     +
  XP_013626976.1 142 R 142
                     7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.9E-5240151IPR009072Histone-fold
SuperFamilySSF471134.04E-3949151IPR009072Histone-fold
PfamPF008081.0E-2752116IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.6E-198098No hitNo description
PROSITE patternPS0068508399IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.6E-1999117No hitNo description
PRINTSPR006151.6E-19118136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MAGNYPSFEN PIPRFKNYNF GSSSSHHQNH DGLAVEDQQE EENMMIKEQE RLLPIANVGR  60
IMKNILPPNA KISKEAKETI QECVSEFISF VTGEASDKCH KEKRKTVNGD DICWAMANLG  120
FDDYAEQLKK YLNRYRVIEG ERANRHGRGA KLSSPDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B5e-4346136191Transcription factor HapC (Eurofung)
4g92_B5e-4346136191Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013626976.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7876651e-160KC787665.1 Brassica napus transcription factor subunit NF-YB5 (NF-YB5) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626976.11e-116PREDICTED: nuclear transcription factor Y subunit B-5-like
SwissprotO822484e-97NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A0D3B7551e-115A0A0D3B755_BRAOL; Uncharacterized protein
STRINGBo3g039790.11e-115(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25528229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.12e-99nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]