PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013627045.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 243aa MW: 27040.8 Da PI: 10.1288

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013627045.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	94.7	7.3e-30	69	122	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av+++ G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl XP_013627045.1 69 RPRLVWTPQLHKRFVDAVAHI-GIKNAVPKTIMQLMSVEGLTRENVASHLQKYRL 122 59*****************.******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.2E-20	66	126	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.292	66	125	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-30	68	127	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.0E-24	70	122	IPR006447	Myb domain, plants
Pfam	PF00249	4.2E-7	72	121	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MRDEEEELPS PEELIPLSQS LITPHLALAF DLRSTHHRNI GNSGHPLPQT TPPQANSSAG 60 DEPARTLKRP RLVWTPQLHK RFVDAVAHIG IKNAVPKTIM QLMSVEGLTR ENVASHLQKY 120 RLYLKRMQSG GGERGGNVGE SDHLFASSPV PAHFLHPTGR QSSDHFIPSF VPMAATLPHP 180 QFLHGRISAV KMDQSLFLAR QSQHQPVLIR PSSLHLQSRV ANYAEDLESG AKRVLTLFPT 240 RQD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	3e-33	69	125	1	57	Transcription factor LUX
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, leaves, stems, petioles, filaments, stigma, pedicels, sepals, anthers, petals, and siliques. {ECO:0000269\|PubMed:20331973}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269\|PubMed:20331973}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013627045.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269\|PubMed:20331973}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC241048	0.0	AC241048.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB058I10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013627045.1	1e-178	PREDICTED: transcription factor BOA-like
Swissprot	O22210	2e-50	MYBC1_ARATH; Transcription factor MYBC1
TrEMBL	A0A0D3AZT0	1e-177	A0A0D3AZT0_BRAOL; Uncharacterized protein
STRING	Bo3g003150.1	1e-177	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1549	27	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05090.1	2e-93	G2-like family protein

Publications ? help Back to Top
Sardesai N,Laluk K,Mengiste T,Gelvin S The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium. Plant Signal Behav, 2018. [PMID:24785741]