PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013627046.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

CPP

Protein Properties

Length: 583aa MW: 64549.2 Da PI: 8.3549

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013627046.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	49.7	7.1e-16	301	339	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+C+CkkskClk+YCeCfaag++C e+C+C dC Nk XP_013627046.1 301 ACKRCHCKKSKCLKLYCECFAAGVYCLESCSCVDCYNKP 339 589**********************************96 PP
2	TCR	49.8	6.9e-16	387	426	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnC+ks+C+kkYCeC+++g+ Cs +C+Ce+CkN XP_013627046.1 387 RHKRGCNCRKSNCVKKYCECYQSGVGCSINCRCEGCKNAF 426 589***********************************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	1.3E-16	300	341	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	36.499	301	427	IPR005172	CRC domain
Pfam	PF03638	8.8E-12	303	338	IPR005172	CRC domain
SMART	SM01114	3.3E-16	387	428	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	2.0E-11	389	425	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 583 aa Download sequence Send to blast
METPQKTIIQ NGTPVSKLKN SPVFNYINNL SPINSVRLIP IAQTFGSLSP SVYTPPHKGS 60 RFKSHTYFSD PSKELVEEAL LETIPPEILK NDCISTPPRR AAANDGSCGD GETDLQRMCD 120 GNVKRKSDTP DWETQFPDTP EMLIYDTLND SEADRCFLPA SSDSKRRSCG GTKPRLEPVS 180 NSKELADSLH RGVRRRLLDF EMPYKQTSEK SSSSCVVPPS TVLHLNAFAM SFKDINVGNE 240 YSLSGNIKAG LQKFENETGE AAGQSVVEEV QKSSLALVEM NQSSPKKKRL KSEQAGEGES 300 ACKRCHCKKS KCLKLYCECF AAGVYCLESC SCVDCYNKPI HEDTVLATRK QIESRNPIAF 360 APKVIRNTDS SIMEAGVDAS KTPASVRHKR GCNCRKSNCV KKYCECYQSG VGCSINCRCE 420 GCKNAFGKKD VSSFVGMDIK QDDVSETWKT QQNNELVRYV PLPPSTPMLL RQPLAQLPIS 480 SNNMLLPQQS QHLHGASGSS LYESQSFRKQ GTSLLSHSRT EKIIEDIENL IQSPITNINA 540 VSPNSKRVSL PHLDSPELTP RRRNGERKLL LSIPTFPSFA PHH

Sequence ? help Back to Top

Protein Sequence Length: 583 aa Download sequence Send to blast

METPQKTIIQ NGTPVSKLKN SPVFNYINNL SPINSVRLIP IAQTFGSLSP SVYTPPHKGS  60
RFKSHTYFSD PSKELVEEAL LETIPPEILK NDCISTPPRR AAANDGSCGD GETDLQRMCD  120
GNVKRKSDTP DWETQFPDTP EMLIYDTLND SEADRCFLPA SSDSKRRSCG GTKPRLEPVS  180
NSKELADSLH RGVRRRLLDF EMPYKQTSEK SSSSCVVPPS TVLHLNAFAM SFKDINVGNE  240
YSLSGNIKAG LQKFENETGE AAGQSVVEEV QKSSLALVEM NQSSPKKKRL KSEQAGEGES  300
ACKRCHCKKS KCLKLYCECF AAGVYCLESC SCVDCYNKPI HEDTVLATRK QIESRNPIAF  360
APKVIRNTDS SIMEAGVDAS KTPASVRHKR GCNCRKSNCV KKYCECYQSG VGCSINCRCE  420
GCKNAFGKKD VSSFVGMDIK QDDVSETWKT QQNNELVRYV PLPPSTPMLL RQPLAQLPIS  480
SNNMLLPQQS QHLHGASGSS LYESQSFRKQ GTSLLSHSRT EKIIEDIENL IQSPITNINA  540
VSPNSKRVSL PHLDSPELTP RRRNGERKLL LSIPTFPSFA PHH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	8e-16	305	424	14	120	Protein lin-54 homolog
5fd3_B	8e-16	305	424	14	120	Protein lin-54 homolog
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers and at significant levels in leaves. Detected with highest levels in developing ovules and microspores, and in petals. {ECO:0000269\|PubMed:10769245, ECO:0000269\|PubMed:18057042}.

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013627046.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189327	1e-166	AC189327.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB037A01, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013627046.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 3 isoform X1
Swissprot	Q8L548	0.0	TCX3_ARATH; Protein tesmin/TSO1-like CXC 3
TrEMBL	A0A0D3BCT6	0.0	A0A0D3BCT6_BRAOL; Uncharacterized protein
STRING	Bo3g081380.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1467	28	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22760.1	0.0	Tesmin/TSO1-like CXC domain-containing protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]