PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013627102.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 26092.4 Da    PI: 9.9976
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013627102.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.86.8e-291565151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien + rq+tfskRrng++KKA+ELSvLCda+va i+fs++g+lye+ss
  XP_013627102.1 15 KKIENRTSRQITFSKRRNGLFKKAHELSVLCDAQVAAIVFSQSGRLYEFSS 65
                    68***********************************************96 PP
2K-box59.81.1e-20951771597
           K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                      +l++e++ + k+i+ L+  qR+l+G++L+s+sl +Lq L +q+eksl+ iRs+K el+ +q+ +l++ke+el ++ ++Lr++
  XP_013627102.1  95 LELKKEMDIMVKKIDLLEVHQRKLMGQGLGSCSLAQLQGLDTQIEKSLRIIRSRKAELYADQLLKLKEKERELLDQRRRLREE 177
                     57899***************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.875767IPR002100Transcription factor, MADS-box
SMARTSM004327.5E-41766IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-29929IPR002100Transcription factor, MADS-box
CDDcd002651.33E-42979No hitNo description
SuperFamilySSF554552.75E-32982IPR002100Transcription factor, MADS-box
PfamPF003196.1E-271663IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-292944IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-294465IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.83194185IPR002487Transcription factor, K-box
PfamPF014865.8E-1996177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MLVIGKMVRG KIEIKKIENR TSRQITFSKR RNGLFKKAHE LSVLCDAQVA AIVFSQSGRL  60
YEFSSSEMEK TIERYGKFSP DYFVSGRPQE ELYLLELKKE MDIMVKKIDL LEVHQRKLMG  120
QGLGSCSLAQ LQGLDTQIEK SLRIIRSRKA ELYADQLLKL KEKERELLDQ RRRLREEEIR  180
ETLVRPMLPV TLHTGKDETG SACRMSKHSS EVETDLFIGF PVTRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P9e-19779173Myocyte-specific enhancer factor 2B
1tqe_Q9e-19779173Myocyte-specific enhancer factor 2B
1tqe_R9e-19779173Myocyte-specific enhancer factor 2B
1tqe_S9e-19779173Myocyte-specific enhancer factor 2B
6byy_A9e-19779173MEF2 CHIMERA
6byy_B9e-19779173MEF2 CHIMERA
6byy_C9e-19779173MEF2 CHIMERA
6byy_D9e-19779173MEF2 CHIMERA
6bz1_A9e-19779173MEF2 CHIMERA
6bz1_B9e-19779173MEF2 CHIMERA
6bz1_C9e-19779173MEF2 CHIMERA
6bz1_D9e-19779173MEF2 CHIMERA
6c9l_A9e-19779173Myocyte-specific enhancer factor 2B
6c9l_B9e-19779173Myocyte-specific enhancer factor 2B
6c9l_C9e-19779173Myocyte-specific enhancer factor 2B
6c9l_D9e-19779173Myocyte-specific enhancer factor 2B
6c9l_E9e-19779173Myocyte-specific enhancer factor 2B
6c9l_F9e-19779173Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}.
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013627102.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627102.11e-162PREDICTED: MADS-box protein SOC1-like isoform X1
SwissprotQ9LT931e-105AGL71_ARATH; MADS-box protein AGL71
TrEMBLA0A078H7191e-156A0A078H719_BRANA; BnaC03g15810D protein
TrEMBLA0A0D3B3X81e-156A0A0D3B3X8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6A8X21e-156A0A3P6A8X2_BRAOL; Uncharacterized protein
STRINGBo3g023570.11e-157(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.37e-92AGAMOUS-like 71