PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013627286.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 202aa    MW: 22980.2 Da    PI: 7.6272
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013627286.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.18.8e-103176655
                    HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    +++E++RR ++ + + eL +llP+     s+ l   + L +A +YIk+Lq
  XP_013627286.1 31 KIIEKNRRIQMEDLYLELNSLLPQT----SRELPLPDQLDEAANYIKELQ 76
                    689*********************8....799*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.2112575IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.09E-92887IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-82993IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00413181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.24E-43280No hitNo description
PfamPF000107.4E-63276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MVYDTSTRRR KTGVWIRGIQ TQSQSRPSDL KIIEKNRRIQ MEDLYLELNS LLPQTSRELP  60
LPDQLDEAAN YIKELQVNVE KNRERKRKLV TTAALDKLNS TGSSSMSSSV DVSVPRRLPR  120
IEIQETGPIL HISLVTSLEH KFMFHEIVRV LTEELGAGLT HAGYSIIDDA VFHIFDCKVE  180
DCDFGATSRI SENLKKLVNS VN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1611TRRRKT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013627286.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627286.11e-148PREDICTED: transcription factor bHLH36-like
SwissprotF4JIJ78e-78BH162_ARATH; Transcription factor bHLH162
TrEMBLA0A0D3BKT61e-147A0A0D3BKT6_BRAOL; Uncharacterized protein
STRINGBo3g162840.11e-147(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.16e-79bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]