PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013627348.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HD-ZIP

Protein Properties

Length: 220aa MW: 25600.7 Da PI: 5.4519

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013627348.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.3	7.5e-20	56	109	4	57
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++t+eq + Le F ++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ XP_013627348.1 56 KRKLTDEQMNMLEMSFCDEHKLESERKDKLAAELGLDPRQVAVWFQNRRARWKN 109 5689************************************************95 PP
2	HD-ZIP_I/II	122.4	2.2e-39	55	144	2	91
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kkr+l++eq+++LE+sF e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE +y++Lk+++d+++ +++rLe+ev +L+e+l XP_013627348.1 55 KKRKLTDEQMNMLEMSFCDEHKLESERKDKLAAELGLDPRQVAVWFQNRRARWKNKRLEDEYNQLKSSHDNVVVDKCRLESEVLQLKEQL 144 9**************************************************************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	8.9E-19	53	114	IPR001356	Homeobox domain
PROSITE profile	PS50071	16.503	55	110	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.92E-18	55	120	IPR009057	Homeodomain-like
CDD	cd00086	5.67E-17	55	111	No hit	No description
Pfam	PF00046	4.0E-17	56	109	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.1E-20	57	117	IPR009057	Homeodomain-like
PRINTS	PR00031	6.1E-6	81	90	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	85	108	IPR017970	Homeobox, conserved site
PRINTS	PR00031	6.1E-6	90	106	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MNPTASDHNM AFISQLYPDV YTHIVPQGKV KPPKRRRKKS KRAVAAGDGS NCLFKKRKLT 60 DEQMNMLEMS FCDEHKLESE RKDKLAAELG LDPRQVAVWF QNRRARWKNK RLEDEYNQLK 120 SSHDNVVVDK CRLESEVLQL KEQLFDAERE IQRLAERVEG GSSNSPVSSS VSVEHNETSF 180 FGDYKVEEDG DDYDNMVYPV PENSYIDGEE WMNYQLNVIF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	33	41	KRRRKKSKR
2	36	57	RKKSKRAVAAGDGSNCLFKKRK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, flowers and siliques. {ECO:0000269\|PubMed:16055682}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013627348.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189549	1e-174	AC189549.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005C21, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013627348.1	1e-165	PREDICTED: homeobox-leucine zipper protein ATHB-40-like
Refseq	XP_022554026.1	1e-165	homeobox-leucine zipper protein ATHB-40-like
Swissprot	O23208	1e-121	ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBL	A0A0D3BJY9	1e-164	A0A0D3BJY9_BRAOL; Uncharacterized protein
STRING	Bo3g153930.1	1e-164	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2208	26	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	1e-110	homeobox protein 40

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241]