PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013627373.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 224aa    MW: 25530.7 Da    PI: 5.6665
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013627373.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.4e-09115162455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++iN+++  L++l+P +     k +  a +Le  ++Y++sLq
  XP_013627373.1 115 SHSLAERVRREKINERLKCLQDLVPGC----YKTMGMAVMLEVIIDYVRSLQ 162
                     8*************************9....355999*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.14E-16109178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.88E-11109166No hitNo description
PROSITE profilePS5088815.612111161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-16111173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6115162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-9117167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:2000488Biological Processpositive regulation of brassinosteroid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MARYEPYNYN IGLNPSLPHI NQTQELMTLD LPVSTTPSSF MLFSNGDLVD ARHNNSHFSP  60
NLLHGDLGRK DKKEESGSKR KRKRSEEEES INEDDIEKPR DVVHVRAKRG QATDSHSLAE  120
RVRREKINER LKCLQDLVPG CYKTMGMAVM LEVIIDYVRS LQNQIEFLSM KLSAASAYYD  180
LNSLDIEPTD TFQGGNMYSA EEMEKILRES VGTQPPNFSS TLPF
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013627373.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1757570.0AK175757.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH075), complete cds, clone: RAFL22-31-M12.
GenBankAY0888850.0AY088885.1 Arabidopsis thaliana clone 98716 mRNA, complete sequence.
GenBankDQ4462890.0DQ446289.1 Arabidopsis thaliana clone pENTR221-At1g25330 basic helix-loop-helix family protein (At1g25330) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627373.11e-167PREDICTED: transcription factor bHLH75
SwissprotA4D9981e-127BH075_ARATH; Transcription factor bHLH75
TrEMBLA0A0D3BI541e-166A0A0D3BI54_BRAOL; Uncharacterized protein
TrEMBLA0A3N6R1I81e-166A0A3N6R1I8_BRACR; Uncharacterized protein
STRINGBo3g138670.11e-167(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140812024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.11e-117bHLH family protein
Publications ? help Back to Top
  1. Khan M, et al.
    Interplay between phosphorylation and SUMOylation events determines CESTA protein fate in brassinosteroid signalling.
    Nat Commun, 2014. 5: p. 4687
    [PMID:25134617]
  2. Eremina M, et al.
    Brassinosteroids participate in the control of basal and acquired freezing tolerance of plants.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(40): p. E5982-E5991
    [PMID:27655893]
  3. Pfannebecker KC,Lange M,Rupp O,Becker A
    Seed Plant-Specific Gene Lineages Involved in Carpel Development.
    Mol. Biol. Evol., 2017. 34(4): p. 925-942
    [PMID:28087776]