PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013627627.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 200aa MW: 22724.1 Da PI: 4.7621

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013627627.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00072	60	82	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + Fs+ L H++ H XP_013627627.1 60 YTCSFCVRGFSNAQALGGHMNIH 82 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.33E-6	58	86	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.5E-4	58	84	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.053	60	87	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	62	82	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MLNFHNFFIA LFMLRKKSII YVLKKIQNME NIKNPKNTDD PDGMSRDSHQ SVDNSLPRSY 60 TCSFCVRGFS NAQALGGHMN IHRRDRANLR QKLMEDNKDD VVAESDSSEV VSLDLNEKQQ 120 EDDLARDDDD QDQDQGVDKN IIPGQKLGFW VQENKVDINA DGKVTEVSSI DGSSSSHHLE 180 NENLDLELRL GQRAVETKTT

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Preferentially expressed in roots and flowers. Slightly expressed in leaves and stems. {ECO:0000269\|PubMed:15486103}.

Functional Description ? help Back to Top
Source	Description
UniProt	Activation factor which mediates telomerase activity and potentiates responses to auxin through the regulation of BT2. Binds in vitro to the DNA sequence 5'-GACAGTGTTAC-3' of the BT2 promoter. {ECO:0000269\|PubMed:15486103, ECO:0000269\|PubMed:17220202}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013627627.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189394	0.0	AC189394.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB055G10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013627627.1	1e-147	PREDICTED: transcriptional regulator TAC1-like
Swissprot	Q9SR34	4e-78	TAC1_ARATH; Transcriptional regulator TAC1
TrEMBL	A0A078F3E4	1e-122	A0A078F3E4_BRANA; BnaC03g36070D protein
TrEMBL	A0A0D3BAE8	1e-122	A0A0D3BAE8_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6BAH8	1e-122	A0A3P6BAH8_BRAOL; Uncharacterized protein
STRING	Bo3g062110.1	1e-123	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14238	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53820.1	5e-16	C2H2 family protein

Publications ? help Back to Top
Ren S,Johnston JS,Shippen DE,McKnight TD TELOMERASE ACTIVATOR1 induces telomerase activity and potentiates responses to auxin in Arabidopsis. Plant Cell, 2004. 16(11): p. 2910-22 [PMID:15486103] Ren S,Mandadi KK,Boedeker AL,Rathore KS,McKnight TD Regulation of telomerase in Arabidopsis by BT2, an apparent target of TELOMERASE ACTIVATOR1. Plant Cell, 2007. 19(1): p. 23-31 [PMID:17220202]