PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013627883.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 192aa    MW: 21280 Da    PI: 9.136
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013627883.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.4e-19150186135
            GATA   1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+  nC++++Tp+WRrgp g+ktLCnaCG+++rk+++
  XP_013627883.1 150 CTnlNCNAIDTPMWRRGPLGPKTLCNACGIKFRKEEE 186
                     66569*****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.1E-6146192IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-11147189No hitNo description
PfamPF003201.0E-16150186IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.596154188IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.6E-13154188IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.49E-11154183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MEKELDLTLR LGLPSPAIET HLSLDTPTTN QGINIDDGRR DNDAGGENHE RHIDVNMRYY  60
NLVFNHFAGI RETLNFTPFP IQPSPYSSPA PTPATPTRSD YVLIDVPARR AVRSSLATGN  120
ALNANADANA KQRRGCGGCC GGRIGWMRKC TNLNCNAIDT PMWRRGPLGP KTLCNACGIK  180
FRKEEERRSK RS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013627883.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627883.11e-142PREDICTED: GATA transcription factor 29-like
SwissprotQ9LT453e-43GAT29_ARATH; GATA transcription factor 29
TrEMBLA0A0D3BCG11e-140A0A0D3BCG1_BRAOL; Uncharacterized protein
STRINGBo3g076170.11e-141(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106522234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.12e-37GATA transcription factor 29
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]