PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013628005.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 119aa    MW: 13626.3 Da    PI: 4.8784
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013628005.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.81.4e-1110102497
                     E-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
              B3   4 vltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                     vlt  d +++g+l+lp + +e++       + ++++ ++ + d + +s+ v+l  +k++ +y++++GWk+  ++ +Lk+gD++ ++  + +++++
  XP_013628005.1  10 VLTDTDLSTQGWLILPTQKIENIeknlgfTL-PRNGAQVEILD-NDKSYWVNL--NKNKAGYYIGQGWKSLRDERDLKTGDVIQLY--W-KDTKF 97 
                     678899999***********88887787533.34666788888.557777***..******************************9..4.34444 PP

                     EEEEE CS
              B3  93 vvkvf 97 
                      ++++
  XP_013628005.1  98 IFSMC 102
                     77776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.3E-145110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-14696IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.8E-117105IPR003340B3 DNA binding domain
PROSITE profilePS508639.0657105IPR003340B3 DNA binding domain
CDDcd100178.71E-128103No hitNo description
PfamPF023627.7E-1010103IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MDPDMMTKRV LTDTDLSTQG WLILPTQKIE NIEKNLGFTL PRNGAQVEIL DNDKSYWVNL  60
NKNKAGYYIG QGWKSLRDER DLKTGDVIQL YWKDTKFIFS MCPSEAEQAS QKGESSSSN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013628005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013628005.13e-84PREDICTED: B3 domain-containing protein At1g08985
SwissprotQ8GWU11e-39Y1898_ARATH; B3 domain-containing protein At1g08985
TrEMBLA0A0D3BE616e-83A0A0D3BE61_BRAOL; Uncharacterized protein
TrEMBLA0A3P6B1206e-83A0A3P6B120_BRAOL; Uncharacterized protein
STRINGBo3g092070.11e-83(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141701218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08985.14e-42B3 family protein