PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013628150.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 233aa MW: 26616.8 Da PI: 6.1509

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013628150.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	126.6	2e-39	6	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgk.rknratksgyWkatgkdkev 92 l+pG+rF Ptd elv +yLk+k+ g+++ + i+e+diyk+eP+dLp+ ++++++ +w+fF++++ k+ +g+ +nr++ sg+Wk+tg+ k+v XP_013628150.1 6 LAPGYRFTPTDLELVRYYLKRKILGDDILP-SPIDELDIYKFEPRDLPQksSLRTGDLQWHFFCPTSDKSCNGSgARNRVAVSGFWKHTGNPKDV 99 579**********************777.68**********95346666888****9999997637788999********* PP NAM 93 lskkgelvglkktLvfykg.rapkgektdWvmheyrle 129 + k+e+vg ++++v+y+g +++++++t+Wvmhey+le XP_013628150.1 100 TY-KEEVVGKRNSFVYYRGmKRSSSTRTNWVMHEYKLE 136 .999*********997777889*******985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.67E-45	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	44.929	6	157	IPR003441	NAC domain
Pfam	PF02365	6.9E-24	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MGGNRLAPGY RFTPTDLELV RYYLKRKILG DDILPSPIDE LDIYKFEPRD LPQKSSLRTG 60 DLQWHFFCPT SDKSCNGSGA RNRVAVSGFW KHTGNPKDVT YKEEVVGKRN SFVYYRGMKR 120 SSSTRTNWVM HEYKLEDRTL EQSVRQDDFV ICKIFEKPGT GHMNGSEYGA PFKDEDWIDE 180 EDKESRVAIP DPGPNGESLL VDGFNNQYEV SRVCLEDGNG LVTRLAKCAS PRD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-34	6	162	17	170	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-34	6	162	17	170	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-34	6	162	17	170	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-34	6	162	17	170	NO APICAL MERISTEM PROTEIN
3swm_A	6e-34	6	162	20	173	NAC domain-containing protein 19
3swm_B	6e-34	6	162	20	173	NAC domain-containing protein 19
3swm_C	6e-34	6	162	20	173	NAC domain-containing protein 19
3swm_D	6e-34	6	162	20	173	NAC domain-containing protein 19
3swp_A	6e-34	6	162	20	173	NAC domain-containing protein 19
3swp_B	6e-34	6	162	20	173	NAC domain-containing protein 19
3swp_C	6e-34	6	162	20	173	NAC domain-containing protein 19
3swp_D	6e-34	6	162	20	173	NAC domain-containing protein 19
4dul_A	6e-34	6	162	17	170	NAC domain-containing protein 19
4dul_B	6e-34	6	162	17	170	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the epidermal cells of the root apical region. {ECO:0000269\|PubMed:20388856}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250\|UniProtKB:Q9C8W9}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013628150.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013628148.1	1e-175	PREDICTED: NAC domain-containing protein 82-like
Refseq	XP_013628150.1	1e-175	PREDICTED: NAC domain-containing protein 82-like
Swissprot	Q9FY82	5e-63	NAC82_ARATH; NAC domain-containing protein 82
TrEMBL	A0A0D3BAT4	1e-154	A0A0D3BAT4_BRAOL; Uncharacterized protein
STRING	Bo3g064460.1	1e-155	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G09330.4	2e-59	NAC domain containing protein 82

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Deeken R, et al. Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments. Plant J., 2008. 55(5): p. 746-59 [PMID:18485061] Ohbayashi I, et al. Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis. Plant Cell, 2017. 29(10): p. 2644-2660 [PMID:28899981]