PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013628425.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 208aa    MW: 23774.1 Da    PI: 10.2492
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013628425.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.25.9e-31151411128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdkevls 94 
                     lp+G+rFhPt++el+ +yL +k+ +++l+  ++i+ +d++ ++P ++p   ++ee++ yfFsk++++ ++ ++r + +  +gyWk   k++ v++
  XP_013628425.1  15 LPVGYRFHPTEQELILHYLLPKAFSSPLPS-SIIPVFDVFFSHPLTFPG--DQEERQRYFFSKKRQEVSSnDHRIKISSGNGYWKPIRKERGVIA 106
                     799*************************99.88***************3..4577899****999988751666666899**************9 PP

             NAM  95 kkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                       g++vg+++tLvfy  + ++++++k +W+m ey l
  XP_013628425.1 107 -CGRTVGIRRTLVFYgtNSSSSSSNKIRWCMTEYCL 141
                     .999***********65557777889********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-389161IPR003441NAC domain
PROSITE profilePS5100535.49515161IPR003441NAC domain
PfamPF023659.7E-2016141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MEVEKRIMVN GSMKLPVGYR FHPTEQELIL HYLLPKAFSS PLPSSIIPVF DVFFSHPLTF  60
PGDQEERQRY FFSKKRQEVS SNDHRIKISS GNGYWKPIRK ERGVIACGRT VGIRRTLVFY  120
GTNSSSSSSN KIRWCMTEYC LAGFSSTKVF GGWAVYKVYK RKEPKGRRQR KSRVRDAEEE  180
EFTIGSNHEF GPPPPSPPTS ADESGSII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-2011411140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013628425.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013628425.11e-153PREDICTED: NAC domain-containing protein 41-like
TrEMBLA0A0D3B1161e-152A0A0D3B116_BRAOL; Uncharacterized protein
STRINGBo3g009490.11e-152(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78742541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14000.11e-110NAC domain containing protein 84