PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013628720.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HB-other

Protein Properties

Length: 1560aa MW: 175442 Da PI: 5.0815

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013628720.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.8	4.5e-19	37	93	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++kR+ t+ ql++Le++++++ yps+++r+eL++kl+L++rq ++WF+ rR k+kk XP_013628720.1 37 KSKRQMKTPFQLQTLEKVYAEETYPSEATRAELSEKLDLSDRQLQMWFCHRRLKDKK 93 689****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.69E-16	33	93	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.39	34	94	IPR001356	Homeobox domain
SMART	SM00389	8.2E-19	36	98	IPR001356	Homeobox domain
CDD	cd00086	3.09E-15	37	93	No hit	No description
Pfam	PF00046	1.0E-16	37	93	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.3E-17	39	93	IPR009057	Homeodomain-like
SMART	SM00571	2.1E-23	496	555	IPR018501	DDT domain
PROSITE profile	PS50827	17.206	496	555	IPR018501	DDT domain
Pfam	PF02791	6.3E-17	497	552	IPR018501	DDT domain
Pfam	PF05066	9.3E-13	678	745	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.4E-6	859	901	IPR028942	WHIM1 domain
Pfam	PF15613	2.3E-11	985	1057	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1560 aa Download sequence Send to blast
MEMGSDEEDQ IKNVVDGHKN KKKKIDTFNN KDSLTSKSKR QMKTPFQLQT LEKVYAEETY 60 PSEATRAELS EKLDLSDRQL QMWFCHRRLK DKKDGQAKKP VQPAAPAATP ALSSVNELPA 120 ADDRSGSGSG SGSGCSPYSE SRMNFASGSG SSGADLGEYE KGGYEPPRLS VMVRRAVVCV 180 EAQLGEPLRE DGPVLGMEFD QLPPGAFGTP IAMEKHQGHP YESKMYEPHD VRPRRSAARS 240 LDDPSSYTPE INGRYSESHA RGMDYETSRS KNSSYMHGNG PYGTHGNASL NCSTSQQDMP 300 SPIAPSAHGD SSLLERKVND GRVGRGSGQK DPEKLEIQKK KYEERMRKEM ERHERERRKE 360 EERLMRERIK EEEKLQREHR REMERREKFL QRENERAEKQ KQKDEIRREK DAIRRKIAIE 420 KATARRIARE SMDLIEDEQL ELMDLAAASK GLPSVLQLDH DTLQNLELYR DSLSSFPPKA 480 LQLKMPFTIS PWKDSEENVA NLLMVWRFLI SFSDVLDLWP FTLDEFIQAF HDYDSRLLGE 540 IHITLLRSII RDIEDVARTR YSGIGNNQYT TANPEGGHPQ IVEGAYAWGF DIRSWKNHLN 600 PLTWPEILRQ LALSSGFGPK LKKKNSHVTQ TAHKVEAKGY EDIVSTIRNG SAAESAFASM 660 LEKGLLAPRK SRHRLTPGTV KFAALHVLSL EGSKGLTLIE LADKIQKSGL RDLSTSKTPE 720 ASISVALTRD AKLFERIAPC TYCVRAPYVK DPADGEAILA DARKKIRAFE NGLTGPEDVN 780 DLERDEDFEC DVDEDPEVDD LATPARASNG TDLGVATDLG VANAMFCDVK SIVPQHHSKD 840 SAVSCVDDNN DVAEDSNQGQ SWIQGLTEGD YCHLSVEERL EALVALVGIV NEGNSLRASL 900 EDRMEAANSL KKQMWAEAQL DNSCMRDVLK LDRDPCQLMN ESKPMEAEGG FINQEAAQEN 960 CSSKRSRSQL KSYIGDKAEE VYPYRSLPLG QDRRRNRYWH FAASASKTDP CSGLIFVELH 1020 DGKWRLIDSE EAFDFLVASL DMRGIRESHL RIMLLKIEGS FKENACKNTR ADSVSPSSAI 1080 SGSNSDSIEA STSIRVELGR NDREKECLSK RFHGFQRWMW TETYSSLPSC ARRHGKKRCE 1140 LLATCEVCVA SYLSEYTHCT SCHRRLNMFD SSERKILDSA LTASPLPFGV RLLKALLVFL 1200 EACVPDEALE SFWTEDKRKD WGFRLNDSSS PEELLQVLIS LESAIKKESL SSNFVTAKEL 1260 LGAADGSGSV DVFPWIPKTV SAVALRLLDL DASILYVKPE KPELISEDDK EQISLFPGKS 1320 LTKGKGAKEQ EDQDEVVVSN SGKKSKKRRV RFGSVTNRKA KRTKVQGGPN RFVAGRSNVV 1380 MDRNLVGVEL NHHQVPGRGK RTVRKRPERN DEDSYRLVRR MADIVRPNSE EVEEEEEEEE 1440 EEQTFRDINE DWASETPDRV MMPMQVDDES DNSVGVESED DDDEGQFVVY DQRNKWGLDW 1500 NSNLNEAMED DKEEVVGAAQ VEREDVAEMS EGSEDDDVPA NNAAANNYES GSEDYSSSDS

Sequence ? help Back to Top

Protein Sequence Length: 1560 aa Download sequence Send to blast

MEMGSDEEDQ IKNVVDGHKN KKKKIDTFNN KDSLTSKSKR QMKTPFQLQT LEKVYAEETY  60
PSEATRAELS EKLDLSDRQL QMWFCHRRLK DKKDGQAKKP VQPAAPAATP ALSSVNELPA  120
ADDRSGSGSG SGSGCSPYSE SRMNFASGSG SSGADLGEYE KGGYEPPRLS VMVRRAVVCV  180
EAQLGEPLRE DGPVLGMEFD QLPPGAFGTP IAMEKHQGHP YESKMYEPHD VRPRRSAARS  240
LDDPSSYTPE INGRYSESHA RGMDYETSRS KNSSYMHGNG PYGTHGNASL NCSTSQQDMP  300
SPIAPSAHGD SSLLERKVND GRVGRGSGQK DPEKLEIQKK KYEERMRKEM ERHERERRKE  360
EERLMRERIK EEEKLQREHR REMERREKFL QRENERAEKQ KQKDEIRREK DAIRRKIAIE  420
KATARRIARE SMDLIEDEQL ELMDLAAASK GLPSVLQLDH DTLQNLELYR DSLSSFPPKA  480
LQLKMPFTIS PWKDSEENVA NLLMVWRFLI SFSDVLDLWP FTLDEFIQAF HDYDSRLLGE  540
IHITLLRSII RDIEDVARTR YSGIGNNQYT TANPEGGHPQ IVEGAYAWGF DIRSWKNHLN  600
PLTWPEILRQ LALSSGFGPK LKKKNSHVTQ TAHKVEAKGY EDIVSTIRNG SAAESAFASM  660
LEKGLLAPRK SRHRLTPGTV KFAALHVLSL EGSKGLTLIE LADKIQKSGL RDLSTSKTPE  720
ASISVALTRD AKLFERIAPC TYCVRAPYVK DPADGEAILA DARKKIRAFE NGLTGPEDVN  780
DLERDEDFEC DVDEDPEVDD LATPARASNG TDLGVATDLG VANAMFCDVK SIVPQHHSKD  840
SAVSCVDDNN DVAEDSNQGQ SWIQGLTEGD YCHLSVEERL EALVALVGIV NEGNSLRASL  900
EDRMEAANSL KKQMWAEAQL DNSCMRDVLK LDRDPCQLMN ESKPMEAEGG FINQEAAQEN  960
CSSKRSRSQL KSYIGDKAEE VYPYRSLPLG QDRRRNRYWH FAASASKTDP CSGLIFVELH  1020
DGKWRLIDSE EAFDFLVASL DMRGIRESHL RIMLLKIEGS FKENACKNTR ADSVSPSSAI  1080
SGSNSDSIEA STSIRVELGR NDREKECLSK RFHGFQRWMW TETYSSLPSC ARRHGKKRCE  1140
LLATCEVCVA SYLSEYTHCT SCHRRLNMFD SSERKILDSA LTASPLPFGV RLLKALLVFL  1200
EACVPDEALE SFWTEDKRKD WGFRLNDSSS PEELLQVLIS LESAIKKESL SSNFVTAKEL  1260
LGAADGSGSV DVFPWIPKTV SAVALRLLDL DASILYVKPE KPELISEDDK EQISLFPGKS  1320
LTKGKGAKEQ EDQDEVVVSN SGKKSKKRRV RFGSVTNRKA KRTKVQGGPN RFVAGRSNVV  1380
MDRNLVGVEL NHHQVPGRGK RTVRKRPERN DEDSYRLVRR MADIVRPNSE EVEEEEEEEE  1440
EEQTFRDINE DWASETPDRV MMPMQVDDES DNSVGVESED DDDEGQFVVY DQRNKWGLDW  1500
NSNLNEAMED DKEEVVGAAQ VEREDVAEMS EGSEDDDVPA NNAAANNYES GSEDYSSSDS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	93	RRLKDKKD

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269\|PubMed:22694359}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013628720.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013628720.1	0.0	PREDICTED: uncharacterized protein LOC106334882
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A0D3BIP7	0.0	A0A0D3BIP7_BRAOL; Uncharacterized protein
STRING	Bo3g143570.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8347	22	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1