PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013628773.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 231aa    MW: 26179.4 Da    PI: 9.9008
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013628773.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.21.3e-20956148
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                    krie+ks rqvtf+kRrng++ KA  LSvLC+  vav+i+ss gk+y 
  XP_013628773.1  9 KRIEDKSSRQVTFCKRRNGLIEKARQLSVLCGSSVAVLIVSSIGKVYS 56
                    79********************************************95 PP
2K-box33.61.6e-121221962599
           K-box  25 kkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                      + +e L++ qR+l   ++++++++ L +Le+q +++l+  R++K+el+++ ++  q+kek l++en+ L ++++
  XP_013628773.1 122 LSLNELLETVQRKLEAANVDNITVQSLISLEEQSKTALSLTRARKTELMMQLVKSFQEKEKLLRDENTVLASQVA 196
                     4557889999999*********************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.249161IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-30160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.2E-24173IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-21323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.5E-201056IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-212338IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-213859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.019111201IPR002487Transcription factor, K-box
PfamPF014867.1E-9125195IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MGRRKVEIKR IEDKSSRQVT FCKRRNGLIE KARQLSVLCG SSVAVLIVSS IGKVYSSSSG  60
DSMAKILKHY EVQHADKLKT LCLNIVKTDQ HRGTLFFTAV IALETLRQVS KLDLTEKTQN  120
YLSLNELLET VQRKLEAANV DNITVQSLIS LEEQSKTALS LTRARKTELM MQLVKSFQEK  180
EKLLRDENTV LASQVAKMGK EKEFLETEDE RAMLLEYSSG SNLRETLPLL K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A9e-18193195MEF2 CHIMERA
6bz1_B9e-18193195MEF2 CHIMERA
6bz1_C9e-18193195MEF2 CHIMERA
6bz1_D9e-18193195MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in most plant tissues, roots, seedlings, leaves, stems, inflorescences, pollen, siliques and flowers. {ECO:0000269|PubMed:11115127, ECO:0000269|PubMed:12837945, ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that prevents vernalization by short periods of cold. Acts as a floral repressor. {ECO:0000269|PubMed:12724541, ECO:0000269|PubMed:19139056, ECO:0000269|PubMed:20551443}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013628773.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Requires EARLY FLOWERING 7 (ELF7) and ELF8 to be expressed. Up-regulated by HUA2. {ECO:0000269|PubMed:15520273, ECO:0000269|PubMed:15659097}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013628773.11e-165PREDICTED: protein MADS AFFECTING FLOWERING 5-like isoform X1
SwissprotQ9FPN73e-82AGL31_ARATH; Agamous-like MADS-box protein AGL31
TrEMBLA0A3P5YIQ41e-141A0A3P5YIQ4_BRACM; Uncharacterized protein
STRINGBo3g100540.11e-133(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM9861987
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65070.22e-96MIKC_MADS family protein
Publications ? help Back to Top
  1. Suter L,Rüegg M,Zemp N,Hennig L,Widmer A
    Gene regulatory variation mediates flowering responses to vernalization along an altitudinal gradient in Arabidopsis.
    Plant Physiol., 2014. 166(4): p. 1928-42
    [PMID:25339407]