PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013628862.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 234aa    MW: 24760.8 Da    PI: 10.0296
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013628862.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.39.6e-073356225
                    -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                    k ++C  ++ t  C++G++C+F+H
  XP_013628862.1 33 KSKPCTKYFSTSGCPFGENCHFSH 56
                    7789******************** PP
2zf-CCCH33.85.7e-11199224127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +kt+ C +f++ G C +GdrC+FaHg+
  XP_013628862.1 199 FKTKMCERFSK-GSCTFGDRCHFAHGE 224
                     69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.0093159IPR000571Zinc finger, CCCH-type
SMARTSM003560.343158IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-63258IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-43356IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-73356IPR000571Zinc finger, CCCH-type
SuperFamilySSF547916.72E-1492173IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.1E-13102171IPR004088K Homology domain, type 1
SMARTSM003221.1E-8102172IPR004087K Homology domain
PROSITE profilePS5008414.131103167IPR004088K Homology domain, type 1
PfamPF000131.6E-9105168IPR004088K Homology domain, type 1
CDDcd001051.14E-10105167No hitNo description
Gene3DG3DSA:4.10.1000.104.7E-16193228IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6198224IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.446198225IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-8198228IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-7199224IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MDTLKRGRPE ANSNGAGFKK SKQEMESTGL GSKSKPCTKY FSTSGCPFGE NCHFSHYVPG  60
GYNAVAQLTN MAPPMPQVSR NMQGRFSGRG DSGPGHVSSF GASATAKISV DASLAGAIIG  120
KGGVSSKQIY RQTGAKLTIQ DHERDPNLKN IELEGTFELI NEASVMVREL IGRLNSAARR  180
PPGGGGGGSE GKPHPGSNFK TKMCERFSKG SCTFGDRCHF AHGEAELRRS GISS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013628862.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535310.0AK353531.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-B10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013628862.11e-172PREDICTED: zinc finger CCCH domain-containing protein 36-like
SwissprotQ9C7C31e-135C3H36_ARATH; Zinc finger CCCH domain-containing protein 36
TrEMBLA0A0D3BAW51e-171A0A0D3BAW5_BRAOL; Uncharacterized protein
TrEMBLA0A3P6ALD01e-171A0A3P6ALD0_BRAOL; Uncharacterized protein
STRINGBo3g064770.11e-172(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-130C3H family protein
Publications ? help Back to Top
  1. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]