PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013629186.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family FAR1
Protein Properties Length: 784aa    MW: 90223.4 Da    PI: 8.195
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013629186.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR161.72.2e-1954128189
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                     ++Yn YA ++GF+ r+ + ++s+++g++ +r+fvCskeg++ +              +rtgC+a ++v+++++gkw+++++++eHnHel
  XP_013629186.1  54 EYYNVYAARTGFKARTGQLYRSRTDGTVSSRRFVCSKEGFQLN--------------SRTGCTAFIRVQRRDTGKWVLDQIQKEHNHEL 128
                     69**************************************876..............589***************************98 PP
2FAR166.85.6e-21220296191
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     +fY++YA+ vGF+vr+ +  +sk +++it+r+fvCs+eg+++++              r+gC a +++k++++g w v++l+++HnH+l p
  XP_013629186.1 220 QFYQAYAEVVGFRVRIGQLFRSKVDNSITSRRFVCSREGFQHPS--------------RMGCGAYMRIKRQDSGGWIVDRLNKDHNHDLEP 296
                     6***************************************9994..............799***************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.6E-1554128IPR004330FAR1 DNA binding domain
PfamPF031011.8E-16220296IPR004330FAR1 DNA binding domain
PfamPF105513.1E-25396487IPR018289MULE transposase domain
PROSITE profilePS5096610.361670706IPR007527Zinc finger, SWIM-type
SMARTSM005755.1E-8681708IPR006564Zinc finger, PMZ-type
PfamPF044342.1E-7681703IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 784 aa     Download sequence    Send to blast
MESSATEHSG FNTMVTKAYP LRILNHNTEE HNNSGGGAEP YVGLEFDTAE EAREYYNVYA  60
ARTGFKARTG QLYRSRTDGT VSSRRFVCSK EGFQLNSRTG CTAFIRVQRR DTGKWVLDQI  120
QKEHNHELGG EAEETTTTPR PVRAPAPTKL ATTVNQHRPK MKVVDESDRE QRSSSKSSLK  180
RFKSCSVGEG EVSNDHHSKA VSGSEPYAGL EFASANEACQ FYQAYAEVVG FRVRIGQLFR  240
SKVDNSITSR RFVCSREGFQ HPSRMGCGAY MRIKRQDSGG WIVDRLNKDH NHDLEPGKKN  300
QDGLKKISDD VTGGLDSVEL IELNNNNKHI KKATSRENRI GKEWYPLLLD YFQSKQTEDM  360
GFFYAVELDV HSGSCLSLFW ADSRARFACS QFGDAVVFDT SYRKGSYSVP FATFVGFNHH  420
RQPVLLGCAV VADESKDSFV WLFQTWLRAM SGRPPRSVVA DQDSSIQQAL SQVFPGAHRR  480
YSAWQMREKE RENLRPFPSE FKYEYEKCIY QSQTVVEFDS VWNSLINKYG LRDDVWLREI  540
YERREHWAPA YLRASFFAGI PINGAFEPFF GPSLDALTPL REFIGRYEQG LEQRREEERK  600
EDFNSYNLQP FLQTKEPVEE QCRRLYTLTV FRIFQNELVQ SYSYLCLKTY EEGAMSRFLV  660
RKCGNESEKH AVTFNATNLN SSCSCQMFEH EGLLCRHVLK VFNLLEVKEL PSKYILHRWT  720
KNAEFGFVRD MESGVSSQDL KALMVWSLRE AASKYIEFGT SSLEKYKLAY EIMREGGKKL  780
CWQR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013629186.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1891970.0AC189197.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB004L02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013629186.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 12 isoform X1
SwissprotQ3E7I50.0FRS12_ARATH; Protein FAR1-RELATED SEQUENCE 12
TrEMBLA0A0D3B1W20.0A0A0D3B1W2_BRAOL; Uncharacterized protein
STRINGBo3g013440.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57302239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.10.0FAR1-related sequence 12
Publications ? help Back to Top
  1. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]