PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013629187.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family FAR1
Protein Properties Length: 771aa    MW: 88843.9 Da    PI: 8.3625
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013629187.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR161.72.2e-1941115189
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                     ++Yn YA ++GF+ r+ + ++s+++g++ +r+fvCskeg++ +              +rtgC+a ++v+++++gkw+++++++eHnHel
  XP_013629187.1  41 EYYNVYAARTGFKARTGQLYRSRTDGTVSSRRFVCSKEGFQLN--------------SRTGCTAFIRVQRRDTGKWVLDQIQKEHNHEL 115
                     69**************************************876..............589***************************98 PP
2FAR166.85.4e-21207283191
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     +fY++YA+ vGF+vr+ +  +sk +++it+r+fvCs+eg+++++              r+gC a +++k++++g w v++l+++HnH+l p
  XP_013629187.1 207 QFYQAYAEVVGFRVRIGQLFRSKVDNSITSRRFVCSREGFQHPS--------------RMGCGAYMRIKRQDSGGWIVDRLNKDHNHDLEP 283
                     6***************************************9994..............799***************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.4E-1541115IPR004330FAR1 DNA binding domain
PfamPF031011.8E-16207283IPR004330FAR1 DNA binding domain
PfamPF105513.0E-25383474IPR018289MULE transposase domain
PROSITE profilePS5096610.361657693IPR007527Zinc finger, SWIM-type
SMARTSM005755.1E-8668695IPR006564Zinc finger, PMZ-type
PfamPF044342.1E-7668690IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 771 aa     Download sequence    Send to blast
MVTKAYPLRI LNHNTEEHNN SGGGAEPYVG LEFDTAEEAR EYYNVYAART GFKARTGQLY  60
RSRTDGTVSS RRFVCSKEGF QLNSRTGCTA FIRVQRRDTG KWVLDQIQKE HNHELGGEAE  120
ETTTTPRPVR APAPTKLATT VNQHRPKMKV VDESDREQRS SSKSSLKRFK SCSVGEGEVS  180
NDHHSKAVSG SEPYAGLEFA SANEACQFYQ AYAEVVGFRV RIGQLFRSKV DNSITSRRFV  240
CSREGFQHPS RMGCGAYMRI KRQDSGGWIV DRLNKDHNHD LEPGKKNQDG LKKISDDVTG  300
GLDSVELIEL NNNNKHIKKA TSRENRIGKE WYPLLLDYFQ SKQTEDMGFF YAVELDVHSG  360
SCLSLFWADS RARFACSQFG DAVVFDTSYR KGSYSVPFAT FVGFNHHRQP VLLGCAVVAD  420
ESKDSFVWLF QTWLRAMSGR PPRSVVADQD SSIQQALSQV FPGAHRRYSA WQMREKEREN  480
LRPFPSEFKY EYEKCIYQSQ TVVEFDSVWN SLINKYGLRD DVWLREIYER REHWAPAYLR  540
ASFFAGIPIN GAFEPFFGPS LDALTPLREF IGRYEQGLEQ RREEERKEDF NSYNLQPFLQ  600
TKEPVEEQCR RLYTLTVFRI FQNELVQSYS YLCLKTYEEG AMSRFLVRKC GNESEKHAVT  660
FNATNLNSSC SCQMFEHEGL LCRHVLKVFN LLEVKELPSK YILHRWTKNA EFGFVRDMES  720
GVSSQDLKAL MVWSLREAAS KYIEFGTSSL EKYKLAYEIM REGGKKLCWQ R
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013629187.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1891970.0AC189197.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB004L02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013629186.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 12 isoform X1
SwissprotQ3E7I50.0FRS12_ARATH; Protein FAR1-RELATED SEQUENCE 12
TrEMBLA0A0D3B1W20.0A0A0D3B1W2_BRAOL; Uncharacterized protein
STRINGBo3g013440.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.10.0FAR1-related sequence 12
Publications ? help Back to Top
  1. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]