PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013629205.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 305aa MW: 33905.1 Da PI: 4.6298

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013629205.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.8	0.00023	251	292	8	54
HHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54 +E+ R d+i++a+ L +++P a K ++ L +A++Y+k L XP_013629205.1 251 NEQSRKDEIRTALKILESIVPGA------KgNEALLLLDEAIDYLKLL 292 69******************9......5599999*******987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.921	243	292	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.24E-6	251	295	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.8E-4	252	294	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009826	Biological Process	unidimensional cell growth
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MPLDTRQRDL PPQPCFEDIA APSLPELGKL YAAELRAPYL QPPPPLQSLL WSHDKRFSLS 60 DMRSWCAAAA ATTPHGALES SQKGLMIFDQ SGNQTRLLRC SFPLRFPSLA AAEPVKLNLS 120 ELQHGLEKGF REDHVTLKEF DEKNCVNGKV SEMHEDTEEI NALLYSDDDY NDDCESDDDD 180 EVMSTGHSPY QVCNKRALED IDSPCKRQKL LDKVENISVS SSSSLVGSKS STKLPESNIS 240 TKEDTGSGLS NEQSRKDEIR TALKILESIV PGAKGNEALL LLDEAIDYLK LLKRDLISTE 300 IKNHC

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, and flowers. {ECO:0000269\|PubMed:16936072}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Involved in stem elongation, probably by regulating a subset of genes involved in this process. {ECO:0000269\|PubMed:16936072}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013629205.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB008268	4e-79	AB008268.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSJ1.
GenBank	AY062561	4e-79	AY062561.1 Arabidopsis thaliana Unknown protein (At5g64340; MSJ1.18) mRNA, complete cds.
GenBank	AY093333	4e-79	AY093333.1 Arabidopsis thaliana unknown protein (At5g64340) mRNA, complete cds.
GenBank	CP002688	4e-79	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013629205.1	0.0	PREDICTED: transcription factor SAC51
Swissprot	Q9FMF4	1e-124	SAC51_ARATH; Transcription factor SAC51
TrEMBL	A0A0D3BF51	0.0	A0A0D3BF51_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6BBN7	0.0	A0A3P6BBN7_BRAOL; Uncharacterized protein
STRING	Bo3g101410.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5546	10	14

Publications ? help Back to Top
Imai A, et al. The dwarf phenotype of the Arabidopsis acl5 mutant is suppressed by a mutation in an upstream ORF of a bHLH gene. Development, 2006. 133(18): p. 3575-85 [PMID:16936072] Imai A,Komura M,Kawano E,Kuwashiro Y,Takahashi T A semi-dominant mutation in the ribosomal protein L10 gene suppresses the dwarf phenotype of the acl5 mutant in Arabidopsis thaliana. Plant J., 2008. 56(6): p. 881-90 [PMID:18694459] Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Cai Q, et al. The SAC51 Family Plays a Central Role in Thermospermine Responses in Arabidopsis. Plant Cell Physiol., 2016. 57(8): p. 1583-92 [PMID:27388339] Yamamoto M,Takahashi T Thermospermine enhances translation of SAC51 and SACL1 in Arabidopsis. Plant Signal Behav, 2017. 12(1): p. e1276685 [PMID:28045577]