PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013629467.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 190aa    MW: 21846.7 Da    PI: 8.9896
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013629467.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_128.24.2e-0974132563
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     +r +rk  NRe+A+rsR +K++ ++e      +L+ +N++Lk++l  +  ++++ k+e+
  XP_013629467.1  74 RRKKRKSLNRESAKRSRVKKQKHLDEISVQLNQLKIQNRKLKNQLRYIYYHCQRTKMEN 132
                     78999999*********************************************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.4E-866120No hitNo description
SMARTSM003382.2E-670134IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.2272135IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.5E-774122No hitNo description
PfamPF001708.5E-774132IPR004827Basic-leucine zipper domain
CDDcd147022.53E-1475119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MSTISPVFSC EPGLTAPVQA SESGFTSWDI SHLFSFLDSS STNIIPDSAS EYLRPGSVNR  60
TGSNVDLTDC TDERRKKRKS LNRESAKRSR VKKQKHLDEI SVQLNQLKIQ NRKLKNQLRY  120
IYYHCQRTKM ENDRLRLEHR MLHDTLLNVR QVLMLCQIES SSECATWSYD NSTVVTVQQD  180
PSVITNHVIV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17394RRKKRKSLNRESAKRSRVKKQK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013629467.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013629467.11e-140PREDICTED: ocs element-binding factor 1-like
TrEMBLA0A0D3A9I71e-139A0A0D3A9I7_BRAOL; Uncharacterized protein
STRINGBo1g080160.11e-139(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33382665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49760.16e-71basic leucine-zipper 5