PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013629750.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 804aa    MW: 88111.2 Da    PI: 6.186
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013629750.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.29.2e-21135190156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++eLe++F+++++p++++r +L+k+l L++rqVk+WFqNrR+++k
  XP_013629750.1 135 KKRYHRHTPQQIQELESMFKECPHPDEKQRLDLSKRLCLETRQVKFWFQNRRTQMK 190
                     688999***********************************************999 PP
2START210.75.5e-663235431206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                     ela++a++elvk+a+++ep+Wvks     +++n++e++++f+++k     +ea+rasg+v+ ++  lve+l++++ +W e+++    +a t++vi
  XP_013629750.1 323 ELALTAMDELVKLAQSDEPLWVKSLdgerDELNQEEYVRTFSSNKQtgLVTEASRASGMVIINSLALVETLMESN-RWMEMFPcnvaRAITTDVI 416
                     5899*************************************99998999**************************.*******9999******** PP

                     CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
           START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlk 173
                     s g      galqlm+aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d  ++++   s v +++lpSg++++++sng+skvtwveh++++
  XP_013629750.1 417 SGGmagtrnGALQLMNAELQVLSPLVPvRNVNFLRFCKQHAEGVWAVVDVSIDTVRDNS-GGSAVTVRRLPSGCVVQDMSNGYSKVTWVEHAEYD 510
                     ***********************************************************.79999999*************************** PP

                     SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 174 grlphwllrslvksglaegaktwvatlqrqcek 206
                     ++++h l+r+l++sgl +g ++wvatlqrqce+
  XP_013629750.1 511 ENQIHHLYRPLLRSGLGFGSQRWVATLQRQCEC 543
                     *******************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-21122192IPR009057Homeodomain-like
SuperFamilySSF466894.71E-20123192IPR009057Homeodomain-like
PROSITE profilePS5007117.038132192IPR001356Homeobox domain
SMARTSM003892.6E-17133196IPR001356Homeobox domain
CDDcd000868.70E-18134192No hitNo description
PfamPF000462.7E-18135190IPR001356Homeobox domain
PROSITE patternPS000270167190IPR017970Homeobox, conserved site
PROSITE profilePS5084843.765314546IPR002913START domain
SuperFamilySSF559611.56E-30318543No hitNo description
CDDcd088757.27E-113318542No hitNo description
SMARTSM002342.4E-43323543IPR002913START domain
PfamPF018521.7E-58323543IPR002913START domain
SuperFamilySSF559612.27E-23562780No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 804 aa     Download sequence    Send to blast
MNFGSLFDNT NGGSPTGARI LSGLTYGNHT TASTVIPGGA MAQVAAASLF SPPINTKTVY  60
SSGLSLALEQ PERGGGGTNR GEASMRNNNN DNNFEGSTTN RRSREEEHES RSGSDNVEGI  120
SGEDQDADDN KPPRKKRYHR HTPQQIQELE SMFKECPHPD EKQRLDLSKR LCLETRQVKF  180
WFQNRRTQMK TQLERHENAL LRQENDKLRA ENMSIREAMR NPMCNNCGGP AMLGDVSLEE  240
HHLRIENARL KDELDRVCNL TGKFLGHHNH HSSSLELAVG NNNGGNFNFP PDFGGGGCLP  300
PPPPQQHQSM VVNGIDQRSV LLELALTAMD ELVKLAQSDE PLWVKSLDGE RDELNQEEYV  360
RTFSSNKQTG LVTEASRASG MVIINSLALV ETLMESNRWM EMFPCNVARA ITTDVISGGM  420
AGTRNGALQL MNAELQVLSP LVPVRNVNFL RFCKQHAEGV WAVVDVSIDT VRDNSGGSAV  480
TVRRLPSGCV VQDMSNGYSK VTWVEHAEYD ENQIHHLYRP LLRSGLGFGS QRWVATLQRQ  540
CECLAILMSS SVTPHDNSSI TPGGRKSMLK LAQRMTVNFC SGISAPSVHS WSKLTVENVD  600
PDVRVMTRKS VDDSGIVLSA ATSVWLPASP QRLFDFLRNE RMRCEWDILS NGGPMQEMAH  660
IAKGQDQGNS VSLLRSNPMN ANQSSMLILQ ETCIDASGAL VVYAPVDIPA MNVVMNGGDS  720
SYVALLPSGF AVLPDGGSGD VEQRPVGGGS LLTVAFQILV NDLPTAKLTV ESVETVNNLI  780
SCTVQKIRDA LQCESQGSRC TVVR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bol.22350.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269|PubMed:10402424}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013629750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532530.0AK353253.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-28-B24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013629750.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A0D3B9470.0A0A0D3B947_BRAOL; Uncharacterized protein
STRINGBo3g054630.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]