PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013630002.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 252aa MW: 28887.8 Da PI: 8.0287

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013630002.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	160.3	7.3e-50	8	131	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 p GfrFhPtdeelv+ yL+++++++++++ vi+e+d+yk++Pw+Lp+++ +ekewyfFs+rd+ky++g+r+nr++ +gyWkatg dk++ + XP_013630002.1 8 PEGFRFHPTDEELVKLYLCRRCASEPISV-PVIAEIDLYKFNPWELPEMALYGEKEWYFFSPRDRKYPNGSRPNRSAGTGYWKATGADKPIGK-- 99 89*************************.89***********7666789*********************************98.. PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++ g+kk Lvfy g+ap+g+kt+W+mheyrl XP_013630002.1 100 PKTLGIKKALVFYAGKAPRGVKTNWIMHEYRL 131 778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.15E-60	4	159	IPR003441	NAC domain
PROSITE profile	PS51005	58.702	7	159	IPR003441	NAC domain
Pfam	PF02365	6.1E-26	8	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MKAELNIPEG FRFHPTDEEL VKLYLCRRCA SEPISVPVIA EIDLYKFNPW ELPEMALYGE 60 KEWYFFSPRD RKYPNGSRPN RSAGTGYWKA TGADKPIGKP KTLGIKKALV FYAGKAPRGV 120 KTNWIMHEYR LANVDRSASS NKKNSLRLDD WVLCRIYNKK GTMEKCYPAV VTTTSTSDSK 180 CSSHVISPDV VTCSDNCESK WVDDLKDEFM FGSTLQNDSF VPQFLYQSEF ATPYEDPQEQ 240 KPFLNWSFGH QG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	9e-85	2	165	10	174	Stress-induced transcription factor NAC1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in root cortex, root caps and sepals. Not detected in imbibed seeds. {ECO:0000269\|PubMed:19176720}.

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in regulation of seed germination under flooding. {ECO:0000269\|PubMed:19176720}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013630002.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By low-oxygen stress. {ECO:0000269\|PubMed:19176720}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY245879	0.0	AY245879.1 Brassica napus NAC-domain protein 1-1 (NAC1-1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013630002.1	0.0	PREDICTED: NAC domain-containing protein 102
Refseq	XP_013643322.1	0.0	NAC domain-containing protein 102-like
Refseq	XP_013735249.1	0.0	NAC domain-containing protein 102-like
Swissprot	Q8H115	1e-147	NA102_ARATH; NAC domain-containing protein 102
TrEMBL	A0A3P6BC28	0.0	A0A3P6BC28_BRAOL; Uncharacterized protein
STRING	Bra038663.1-P	1e-169	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM190	28	276

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63790.1	1e-142	NAC domain containing protein 102

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]