PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013630257.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 235aa MW: 24258.2 Da PI: 10.8713

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013630257.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126.9	2.1e-39	27	190	2	118
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas...nsssg..... 88 a+kk + +++hTkv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s s+ + XP_013630257.1 27 AVKKPPAKDRHTKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TASLSTSSPfalG---Krgvra 117 79**************************************************************99999777.2222222222220...134556 PP TCP 89 ........................................................kaaksaakskksqksaasalnlakesraka 118 + ++a++l + ++++++a XP_013630257.1 118 gegeagagagggltvgptmgaslmsgggfwavparpdfgqvwsfatgappemlftqQ-------------QQAATLFVRQQQQQQA 190 666667777888888888888888888888888888888888666555555555432.............2222222222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.59	33	87	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.2E-32	33	172	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MTSNDGSGPN GVIAEHPSAV NKGTLNAVKK PPAKDRHTKV DGRGRRIRMP IICAARVFQL 60 TRELGHKSDG QTIEWLLRQA EPSIIAATGT GTTPASFSTA SLSTSSPFAL GKRGVRAGEG 120 EAGAGAGGGL TVGPTMGASL MSGGGFWAVP ARPDFGQVWS FATGAPPEML FTQQQQAATL 180 FVRQQQQQQA SAAAAMGEAS AARVGNYLPG HHLNLLASLS GGNTGSGRRE EDNPR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in leaves, roots, and stems. {ECO:0000269\|PubMed:19286557}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of the circadian clock. Acts as a repressor of CCA1 by binding to its promoter. No binding to the LHY promoter. {ECO:0000269\|PubMed:19286557}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013630257.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189332	0.0	AC189332.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB038E05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013630257.1	1e-170	PREDICTED: transcription factor TCP21-like
Swissprot	Q9FTA2	1e-111	TCP21_ARATH; Transcription factor TCP21
TrEMBL	A0A0D3B0A0	1e-169	A0A0D3B0A0_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6AN88	1e-169	A0A3P6AN88_BRAOL; Uncharacterized protein
STRING	Bo3g004850.1	1e-169	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08330.1	3e-41	TCP family protein

Publications ? help Back to Top
Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Ng DW,Chen HH,Chen ZJ Heterologous protein-DNA interactions lead to biased allelic expression of circadian clock genes in interspecific hybrids. Sci Rep, 2017. 7: p. 45087 [PMID:28345627] Lee CM, et al. Decoys Untangle Complicated Redundancy and Reveal Targets of Circadian Clock F-Box Proteins. Plant Physiol., 2018. 177(3): p. 1170-1186 [PMID:29794020]