PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013631110.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 564aa    MW: 61524.3 Da    PI: 4.5595
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013631110.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS282.11.6e-862025633374
            GRAS   3 elLlecAeavssgdle...laqalLarlselaspdgd....pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                     e+L+++A  ++  d++   laq +Larl+++ +++ +    p+qR+a y+te L++ l+        +lpp +t       ++aa+++fse+sP+
  XP_013631110.1 202 EQLFNAAGELTGTDNNnpvLAQGILARLNQNLNNNLNnpkpPFQRAALYVTESLQSLLQP-------SLPPPHT----LLLKIAAYRAFSETSPF 285
                     78889998888755554669**********955544335569*****************9.......4555444....7999************* PP

            GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlv 182
                     l+f ++taNq+Ile++e+ +r+ i+Dfd++ G+QW +L+q+La+R++++p  sl+iT ++sp+++ +k el+ t+e+L+ fA e+gv+fe ++l 
  XP_013631110.1 286 LQFVNFTANQTILESLERFDRIRIVDFDVGFGGQWSSLIQELANRSSSAPlsSLKITSFSSPSTVsDKFELRFTEENLRAFAGETGVTFEMEMLN 380
                     **********************************************8888889**********999****************************9 PP

            GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                     +++l +  l+ Lr + +Ea+aVnl ++             + + +L+++k++sP+vvv+++      +++F + +++al+yy++l++sle+  ++
  XP_013631110.1 381 METLLNPPLSLLRSSDKEAIAVNLPISSVIS--------GYLPLILRFLKQISPNVVVCSDT---IPDAPFPNAVVDALHYYTSLLESLESPNSS 464
                     9************************954443........36677***************986...5778********************999889 PP

            GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee......sgslvlgWkdrp 366
                      +e+ +++Er++++++i+ +++++ ++    + +   Wr+ ++++GF++v++s++a++qa++ll++ +++g+++e++        slvl+W++++
  XP_013631110.1 465 SQEAVASIERFCVQPWIQRLLTNRYRW----MDKSPPWRSLFGQCGFTSVAMSQTAETQAEYLLQRNPMRGFHLEKRqsssftTSSLVLCWQKKE 555
                     99999**********************....999*****************************************88777777899********* PP

            GRAS 367 LvsvSaWr 374
                     Lv+vSaW+
  XP_013631110.1 556 LVAVSAWK 563
                     *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.684175537IPR005202Transcription factor GRAS
PfamPF035145.6E-84202563IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MPLPFEELQG LGFSYGTRED LCCVVGVNNG SSEPTSVLDS SRSPSPFLSS STTTLSSSHG  60
GPGGAAAGKC NQMAFEDLDG VLSGSPGQEQ SIFRLIMSGD VVDPGSEFMG FDPGSGSDPN  120
PLFGYGFPLD EPPPEEEDLK FQITTDPNPC FFSGGSSPPA KRLNSGQPVS HQWGFPFSDP  180
GHPFLAPPPK LAGTETTAVI TEQLFNAAGE LTGTDNNNPV LAQGILARLN QNLNNNLNNP  240
KPPFQRAALY VTESLQSLLQ PSLPPPHTLL LKIAAYRAFS ETSPFLQFVN FTANQTILES  300
LERFDRIRIV DFDVGFGGQW SSLIQELANR SSSAPLSSLK ITSFSSPSTV SDKFELRFTE  360
ENLRAFAGET GVTFEMEMLN METLLNPPLS LLRSSDKEAI AVNLPISSVI SGYLPLILRF  420
LKQISPNVVV CSDTIPDAPF PNAVVDALHY YTSLLESLES PNSSSQEAVA SIERFCVQPW  480
IQRLLTNRYR WMDKSPPWRS LFGQCGFTSV AMSQTAETQA EYLLQRNPMR GFHLEKRQSS  540
SFTTSSLVLC WQKKELVAVS AWKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A8e-2824556256377Protein SCARECROW
5b3h_D8e-2824556256377Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013631110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013631110.10.0PREDICTED: scarecrow-like protein 22
SwissprotQ9M0000.0SCL22_ARATH; Scarecrow-like protein 22
TrEMBLA0A0D3BWM00.0A0A0D3BWM0_BRAOL; Uncharacterized protein
STRINGBo4g104900.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150661619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60630.10.0GRAS family protein
Publications ? help Back to Top
  1. Gustafson AM, et al.
    ASRP: the Arabidopsis Small RNA Project Database.
    Nucleic Acids Res., 2005. 33(Database issue): p. D637-40
    [PMID:15608278]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]