PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013631448.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 361aa    MW: 40068.2 Da    PI: 8.6149
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013631448.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.14.5e-3969128362
          zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     e+alkcprCdstntkfCy+nny+l+qPr+fCk+CrryWt+GGalrnvPvGgg r+nk+s+
  XP_013631448.1  69 EAALKCPRCDSTNTKFCYFNNYNLTQPRHFCKTCRRYWTRGGALRNVPVGGGFRRNKRSK 128
                     6789*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-3452121IPR003851Zinc finger, Dof-type
PfamPF027012.2E-3271126IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.46972126IPR003851Zinc finger, Dof-type
PROSITE patternPS01361074110IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MDFSSLPVNS HNWQQQGNTQ QQDRVTSYQN PNFNLPQFSS PPASQAGSSQ ARVDSMVERA  60
RIAKIPLPEA ALKCPRCDST NTKFCYFNNY NLTQPRHFCK TCRRYWTRGG ALRNVPVGGG  120
FRRNKRSKSN GGGRSKSTVV VSADNNNTSS SLSCNPSYSN PSKFLSYGQA PGFTSNLPIL  180
PPFQSHGGYN SSNIGLDFSG IQMSGMSSSG GMLDPWRMSS LQQSQQFPFL SNTSGLDQSS  240
NSLYPLLDGN EGVNQADPLQ ESSDYSNQLR SKPFMDMEQP RNVKAEENDQ DLDKDGNGVN  300
NLSRNFLGNI NINPSGNDEY TSWGGIPCDG SYIYYWGNIK PWSYYIHDPR LFLGINGKVW  360
L
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269|PubMed:10758484}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013631448.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013631448.10.0PREDICTED: dof zinc finger protein DOF3.6
SwissprotQ9M2U11e-146DOF36_ARATH; Dof zinc finger protein DOF3.6
TrEMBLA0A0D3BXR70.0A0A0D3BXR7_BRAOL; Uncharacterized protein
STRINGBo4g116790.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17132886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.21e-115OBF-binding protein 3