PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013631820.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 146aa    MW: 16408.7 Da    PI: 5.7898
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013631820.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.73.1e-0638781055
                    HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    + R d++ ++++ L++l+ +      +K + a++L +A++YI+ Lq
  XP_013631820.1 38 KERKDKVGERISALQQLVSPY-----GKTDTASVLLEAMQYIQFLQ 78
                    67889999***********99.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.6422877IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.6E-102887IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-43683IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-123691IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.46E-63882No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MEYSRDSAGM MMENKRNVYS LEEGSIKRHK SDLSFSSKER KDKVGERISA LQQLVSPYGK  60
TDTASVLLEA MQYIQFLQEQ VKVLSAPYLQ ATPITTHEEV EEYILRSRGL CLVPMEYTVG  120
VAQTNGADIW APVKTPAFSL QSNSPI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013631820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5760411e-114AJ576041.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH-beta gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013631820.11e-106PREDICTED: transcription factor bHLH113
SwissprotQ7XJU13e-86BH154_ARATH; Transcription factor bHLH154
TrEMBLA0A0D3BSY81e-104A0A0D3BSY8_BRAOL; Uncharacterized protein
STRINGBo4g049510.11e-105(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33162761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31730.11e-88bHLH family protein