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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_013631837.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
E2F/DP |
| Protein Properties |
Length: 487aa MW: 53059.1 Da PI: 4.7548 |
| Description |
E2F/DP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_013631837.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | E2F_TDP | 82.4 | 3.6e-26 | 168 | 233 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
r+++sL+llt+kf++l++++++g+++ln++a++L +v ++RRiYDi+NVLe+++liek kn+i wkg
XP_013631837.1 168 RYDSSLGLLTRKFVNLIKQAKDGMLDLNKAAETL---EV--QKRRIYDITNVLEGIDLIEKPFKNQILWKG 233
6899******************************...99..****************************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0051446 | Biological Process | positive regulation of meiotic cell cycle |
| GO:0005667 | Cellular Component | transcription factor complex |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 487 aa
Download sequence Send
to blast |
MSGGARSSPG PSQPPPPRHP PSSPSPSSSL PVVPPIRRNL AFASTKPPFN PSDYHRFAPS 60
HLTNDDRSLV NLCRIGDRED DDVLVHRSPS RKRKTTTTSV TAPSSSNGLT SSGFSTISNS 120
PCKTPVSAKG VRVNTKSKAK GSQSIPQTPI SNAVVGSPAT LTPSGSCRYD SSLGLLTRKF 180
VNLIKQAKDG MLDLNKAAET LEVQKRRIYD ITNVLEGIDL IEKPFKNQIL WKGLDTSGPG 240
DVDADVSVLQ TEIENLSLEE QALDNQIRET EERLRELSEN EKNQKWLFVT EEDIKSLPGF 300
QNQTLIAVKA PHGTTLEVPD PDEAVDIPQR RYRIILRSTM GPIDVYLVSE FEKKFEDTNG 360
TATPPAACLP IASCSGSSEN HEIEALTVDN KGTAIEHQAS QDHAHAQPDT SDLNYLQEQV 420
GGMLKITPSD VENDDTDYWL LSNADISMTD IWKTDSGIDW DYEIGDVSTP PPVMGEIAPT 480
GIDSTPR
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in a cell cycle-dependent manner. Most abundant in early S phase. Decreased expression during the passage into G2. {ECO:0000269|PubMed:11108847, ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543}. |
| Uniprot | TISSUE SPECIFICITY: Highly expressed in the shoot apical meristem, emerging leaf primordia, and vascular tissues of young leaf primordia. Expressed in flowers, in epidermis and cortex of hypocotyls, and at lower levels in leaves. {ECO:0000269|PubMed:11108847, ECO:0000269|PubMed:11889041}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Regulates gene expression both positively and negatively. Activates the expression of E2FB. Involved in the control of cell-cycle progression from G1 to S phase. Stimulates cell proliferation and delays differentiation. {ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11862494, ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12913157, ECO:0000269|PubMed:15377755, ECO:0000269|PubMed:16514015, ECO:0000269|PubMed:19662336}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JN942984 | 0.0 | JN942984.1 Brassica juncea E2F transcription factor (E2Fa) mRNA, partial cds. |
