PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013631897.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Protein Properties

Length: 133aa MW: 15438.7 Da PI: 8.3148

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013631897.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.2	4.5e-16	19	110	1	96
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f k++ +d +++++ ++p + +++ ++ ++++ + g sWev + +k+++ y+ ++GW++Fv++n L ++fv+F+++g+++f v XP_013631897.1 19 FSKTFACADLSSECMRTFPFDLMKSLPKE-DLANKMVIIAKCGSSWEVDI--SKNPRFyYMEKSGWNQFVRDNALGKNEFVTFTHKGSMCF--DV 108 67888888999999999999999888533.46679999**********..**566669********************99999..55 PP EE CS B3 95 kv 96 + XP_013631897.1 109 NI 110 54 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.1E-16	13	114	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.29E-17	14	118	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.37E-14	18	111	No hit	No description
Pfam	PF02362	3.0E-13	19	109	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.434	19	114	IPR003340	B3 DNA binding domain
SMART	SM01019	1.6E-15	19	114	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence Send to blast
MDMNSWFDRV KEDRKNLSFS KTFACADLSS ECMRTFPFDL MKSLPKEDLA NKMVIIAKCG 60 SSWEVDISKN PRFYYMEKSG WNQFVRDNAL GKNEFVTFTH KGSMCFDVNI YGKDEKEIVR 120 PPIMASSNNP KSF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013631897.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013631897.1	1e-95	PREDICTED: B3 domain-containing protein At2g35310
Refseq	XP_022557137.1	1e-95	B3 domain-containing protein At2g35310-like isoform X2
Swissprot	Q5PNU4	5e-43	Y2531_ARATH; B3 domain-containing protein At2g35310
TrEMBL	A0A078JUU2	1e-87	A0A078JUU2_BRANA; BnaAnng36900D protein
STRING	Bra021943.1-P	1e-86	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM565	21	135

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35310.1	2e-45	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]