PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013632080.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Protein Properties

Length: 204aa MW: 23482.6 Da PI: 7.0173

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013632080.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	42.2	1.4e-13	21	97	10	96
HHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 10 vlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++++ l +p f+ +h + +++ kt +l++ s +W+v++ ++++ l++GW++F+ ++L+ gD+v+F+++g+ lv++v XP_013632080.1 21 GFTNH-LDIPVAFFLKHLERNNKRKTAKLRSdASETTWRVEI--DGQR----LSDGWEDFAVGHDLRLGDIVIFRHEGE----LVFHV 97 56666.9********444456779999986889***..9888....*********************7664....44443 PP
2	B3	32.3	1.8e-10	142	198	1	59
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgry 59 ff +++++++lk+++++lpk+fa ++g+ k ++++l++e+g+sW++ l+y+ ++gr+ XP_013632080.1 142 FFMTTVTASNLKRDIVYLPKTFAMSNGLMK--RFEIVLMNEEGESWKIGLTYESCRGRF 198 788899******************9995..579*************998888875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.34E-19	9	109	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.9E-20	9	104	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.053	11	103	IPR003340	B3 DNA binding domain
CDD	cd10017	2.51E-15	12	98	No hit	No description
SMART	SM01019	2.6E-18	14	103	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.6E-8	24	96	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.88E-9	137	196	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	5.3E-10	137	196	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.7E-7	142	198	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	8.261	142	204	IPR003340	B3 DNA binding domain
SMART	SM01019	0.23	142	202	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MANSPLHSPI NPHFFQPLLP GFTNHLDIPV AFFLKHLERN NKRKTAKLRS DASETTWRVE 60 IDGQRLSDGW EDFAVGHDLR LGDIVIFRHE GELVFHVTAL GPSCSEIQYG GYSDEEEDKK 120 EKVSRKKKSP NAETDHSTDQ SFFMTTVTAS NLKRDIVYLP KTFAMSNGLM KRFEIVLMNE 180 EGESWKIGLT YESCRGRFCR HQIY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013632080.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013632080.1	1e-154	PREDICTED: B3 domain-containing protein REM10-like
Swissprot	P0DH85	2e-88	REM10_ARATH; B3 domain-containing protein REM10
TrEMBL	A0A3P6D0I0	1e-144	A0A3P6D0I0_BRAOL; Uncharacterized protein
STRING	XP_006405016.1	1e-104	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14490	15	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24700.1	2e-83	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]