PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013632081.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 204aa    MW: 22410.7 Da    PI: 8.6277
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013632081.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.86.2e-163692594
                    TT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3 25 ehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                    ++g+ k++   +tl  ++g +W+v+l  ++++++  l+kGWkeF+kangLk+g+ ++++l++++e  +++
  XP_013632081.1  3 ANGMTKPG--LITLVGKDGVKWKVNLYEERSGSSLCLGKGWKEFAKANGLKTGEYFTLELVWENE-IPML 69
                    55655444..79**************54777777***************************9543.3555 PP
2B3421.7e-131151991097
                     HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
              B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                       k + l lp +f++++g+kk +  ++tl  ++g +W   l    ++g++  + GW++F++ang+k gD++ + ++++ +++ +v+k+ 
  XP_013632081.1 115 DVKACTLHLPSEFVTAIGIKKLG--KITLLGKDGMKWWGCL--LSRDGTVAVGIGWRNFCEANGVKLGDSFSLVFINEeEDTGPVFKFS 199
                     456789***********999755..8********9999999..8999999***********************9998879999999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.775175IPR003340B3 DNA binding domain
CDDcd100172.19E-15171No hitNo description
SMARTSM010191.3E-9175IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.4E-14269IPR015300DNA-binding pseudobarrel domain
PfamPF023622.4E-14370IPR003340B3 DNA binding domain
SuperFamilySSF1019361.61E-16372IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-15103200IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-16104199IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.632106201IPR003340B3 DNA binding domain
SMARTSM010194.3E-13106202IPR003340B3 DNA binding domain
PfamPF023621.5E-11115199IPR003340B3 DNA binding domain
CDDcd100172.26E-10119199No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MRANGMTKPG LITLVGKDGV KWKVNLYEER SGSSLCLGKG WKEFAKANGL KTGEYFTLEL  60
VWENEIPMLS LVNTESASDR KQRGEPSKAM EKERSTDTSS IVQNRVVTLA LETKDVKACT  120
LHLPSEFVTA IGIKKLGKIT LLGKDGMKWW GCLLSRDGTV AVGIGWRNFC EANGVKLGDS  180
FSLVFINEEE DTGPVFKFSP NSGN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013632081.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013745925.21e-147B3 domain-containing protein REM12-like
SwissprotP0CAP41e-70REM12_ARATH; B3 domain-containing protein REM12
TrEMBLA0A078JGZ91e-146A0A078JGZ9_BRANA; BnaCnng48570D protein
STRINGBo4g154880.11e-146(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142671121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.13e-64B3 family protein