PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013632509.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 203aa MW: 23057.8 Da PI: 8.3225

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013632509.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.2	9.1e-09	56	112	1	46
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT........TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg........kgRtlkqcksrwqk 46 r W++ +d l+dav + Wk+Ia++ + ++R + qck+rwqk XP_013632509.1 56 RRTWSPTDDVVLIDAVVGNEQRsiaFWKRIAAYYNaspklvgcEKREAAQCKNRWQK 112 678***************99*****************99*********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.5E-6	50	113	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.013	51	118	IPR017930	Myb domain
SuperFamily	SSF46689	1.87E-5	52	113	IPR009057	Homeodomain-like
SMART	SM00717	0.0016	55	116	IPR001005	SANT/Myb domain
Pfam	PF00249	5.3E-7	56	112	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MEFNPFTEPS NFVDLLSSQQ NVVFGNVPES QLPFFASQAT HGLNIGEETQ GSRKERRTWS 60 PTDDVVLIDA VVGNEQRSIA FWKRIAAYYN ASPKLVGCEK REAAQCKNRW QKINDLICKF 120 CGAFEAATRE RTSGQNETDV LKLAHEIFFT NYNKKFTLEH AWKELRNDQK WSELSTAKAE 180 GSSKKSERVK VSREAIGSGR ITD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013632509.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013632509.1	1e-151	PREDICTED: glutathione S-transferase T3-like
TrEMBL	A0A0D3BR88	1e-132	A0A0D3BR88_BRAOL; Uncharacterized protein
STRING	Bo4g030640.1	1e-133	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22	2	5