PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013633107.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 257aa    MW: 29101.4 Da    PI: 5.1744
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013633107.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57386.24.2e-2778167397
          DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                     f rl+s++DeivlLqG+i   + +  +p d    fy+ +k+s sf+v+ +q+ eKir+LKkK+++++ +   g e s+ ++h+qk+f+lsk iWg
  XP_013633107.1  78 FTRLFSDKDEIVLLQGIIIDSEVK--NPLDYKRSFYQSMKGSFSFDVTLDQFKEKIRSLKKKYTRNEMR---GGEASLLNSHEQKCFQLSKAIWG 167
                     89***************9886665..599999***********************************99...9999******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045049.7E-2478167IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MANNLKHPLE DPPSSPCSSA GEKEIESEEE DQNLHTIISS EEDEPEDPPP RSGSKKDVCG  60
SSDQENLYAR WELLTPCFTR LFSDKDEIVL LQGIIIDSEV KNPLDYKRSF YQSMKGSFSF  120
DVTLDQFKEK IRSLKKKYTR NEMRGGEASL LNSHEQKCFQ LSKAIWGADG VAFESAISYN  180
NSQSKESERG LTKKRDLVTP RKGKNAQEAS KRGDTKKAPL VEKESDWGES SFFLGMDFLK  240
EKWTKVPPSG TKKETQE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013633107.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013633107.10.0PREDICTED: mediator-associated protein 1-like
TrEMBLA0A397ZJX81e-109A0A397ZJX8_BRACM; Uncharacterized protein
STRINGBra028106.1-P1e-104(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13542721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66420.13e-25DNA-binding storekeeper protein-related transcriptional regulator