PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013633124.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YC
Protein Properties Length: 225aa    MW: 25808.6 Da    PI: 8.2762
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013633124.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC1147.4e-3659162298
           NF-YC   2 lksfwekqiekatdfk..nhelPlarikkilkadedvk.....misaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 
                     lk+fw +  ++ + f   n  lPl+r+kkilk+d++v+     +is +aP+l+skace++ileltlr+w+h ++++r+t++++d++ av++++++
  XP_013633124.1  59 LKAFWDNLWNQLQYFTgfNCYLPLSRVKKILKTDPKVRgmitxKISRDAPALFSKACEYLILELTLRAWMHXQSCTRQTIQRCDVFHAVKNSETH 153
                     89******9999999888999****************8644446899************************************************ PP

           NF-YC  90 dflvdivpr 98 
                      fl+d vp 
  XP_013633124.1 154 CFLIDLVPF 162
                     *******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.72E-2176168IPR009072Histone-fold
PfamPF008083.1E-1180147IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.109.0E-2480161IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MASEEDESWA PLGRQCCGPV LHMKLRALLL PKRSASGSFL CKCHELHETE ALSSLEAVLK  60
AFWDNLWNQL QYFTGFNCYL PLSRVKKILK TDPKVRGMIT XKISRDAPAL FSKACEYLIL  120
ELTLRAWMHX QSCTRQTIQR CDVFHAVKNS ETHCFLIDLV PFGPYCAMHH SIRLAILHVL  180
PPAKMILPDM NVANDMNQIK QENRIDKPFS DHKGFDLNSI SREFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C5e-215816118118HapE
4g92_C5e-215816118118HapE
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013633124.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013633124.11e-167PREDICTED: LOW QUALITY PROTEIN: nuclear transcription factor Y subunit C-10
SwissprotQ58CM81e-62NFYCA_ARATH; Nuclear transcription factor Y subunit C-10
TrEMBLA0A3N6Q3G11e-119A0A3N6Q3G1_BRACR; Uncharacterized protein
STRINGBo4g136990.11e-93(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM164221112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38140.16e-65nuclear factor Y, subunit C12
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]