PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013633144.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 138aa    MW: 15792.5 Da    PI: 10.9424
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013633144.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind47.84e-151093289
                    HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHH..HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
    HSF_DNA-bind  2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpk..yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89
                    F  +ly+i+ed++ +++isws +n+nsfvv+d +++ +++Lpk      +n++ F+ +L   gF+ v +  ++        eF+h+ F+++
  XP_013633144.1 10 FYIQLYQIIEDRSSDQIISWSkSNNNSFVVWDLKKLRSNILPKssSVLGKNVTEFIAKLRSHGFTTVGKGPGE-------LEFSHDDFSRS 93
                    899******************8999****************994456689*******************9998.......9*******886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-16593IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.8E-106102IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.53E-13793IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.2E-121094IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-51033IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-56476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MISKLSTSSF YIQLYQIIED RSSDQIISWS KSNNNSFVVW DLKKLRSNIL PKSSSVLGKN  60
VTEFIAKLRS HGFTTVGKGP GELEFSHDDF SRSPVMKKMM AKALSERIEK FDAQIKAMKC  120
RLKAKRKLPS KLRLSFKT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013633144.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013633144.11e-96PREDICTED: heat stress transcription factor A-4a-like
TrEMBLA0A078JFV63e-95A0A078JFV6_BRANA; BnaCnng47870D protein
TrEMBLA0A0D3BZX33e-95A0A0D3BZX3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6BZ363e-95A0A3P6BZ36_BRAOL; Uncharacterized protein
STRINGBo4g139200.14e-96(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38391457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77570.12e-25Winged helix-turn-helix transcription repressor DNA-binding