PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013633147.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 178aa MW: 20554.3 Da PI: 10.0883

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013633147.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	56.6	3.4e-18	18	66	2	50
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +++ +s + +++ R+ +i+KKA+EL +L d+e++vi ++++g+l++++ XP_013633147.1 18 SSSTYSLAPTSLNSRLLTIFKKAQELTTLSDIEACVIHYGPDGELRTWP 66 6788999*****************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	7.19E-13	30	101	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-8	32	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MRSPRPSSCS ESSSSSSSSS TYSLAPTSLN SRLLTIFKKA QELTTLSDIE ACVIHYGPDG 60 ELRTWPENRD IVRDLALRYI QLDEAKRRKK NVNLYEFLNK NKDKKKMANN FKKKAKKNVE 120 ELKYPISDHY SPDEINQLIH SLELSYSTLQ ERRRFLAAKK HNESLNPSQF TPYHKSLG

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013633147.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013633147.1	1e-128	PREDICTED: agamous-like MADS-box protein AGL93
Swissprot	Q9FIX0	3e-51	AGL81_ARATH; Agamous-like MADS-box protein AGL81
TrEMBL	A0A078JD85	1e-124	A0A078JD85_BRANA; BnaCnng47860D protein
TrEMBL	A0A0D3BZX9	1e-124	A0A0D3BZX9_BRAOL; Uncharacterized protein
STRING	Bo4g139260.1	1e-125	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G38740.1	2e-46	AGAMOUS-like 77

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]