PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013633148.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 144aa    MW: 16440.1 Da    PI: 10.7285
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013633148.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind47.35.5e-151398291
                    HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHH..HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
    HSF_DNA-bind  2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpk..yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91
                    F  +ly+i++d + +++isws +n nsf+v+d++++ +++L k      +n++ F+ +L   gF++v +  ++        eF+h++F++g  
  XP_013633148.1 13 FYVQLYQIVDDCSWDQIISWSkSNTNSFIVWDMKKLRSDILLKssSVLGKNVTEFIAKLRSHGFRSVAKGPGE-------LEFSHDEFSRGPL 98
                    899******************8888****************663367789*******************9999.......*********9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-16696IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.5E-99102IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.17E-121197IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.8E-121397IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-51336IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-56779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MSRKLSTGSS SSFYVQLYQI VDDCSWDQII SWSKSNTNSF IVWDMKKLRS DILLKSSSVL  60
GKNVTEFIAK LRSHGFRSVA KGPGELEFSH DEFSRGPLMK KKMMVKALSE SIERFDAQLK  120
ALKSRLKAKK ASLKVENLFQ NLRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013633148.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013633148.11e-100PREDICTED: heat stress transcription factor A-4a-like
RefseqXP_013645727.11e-100heat stress transcription factor A-4a
TrEMBLA0A078K1744e-99A0A078K174_BRANA; BnaUnng05160D protein
TrEMBLA0A0D3BZY04e-99A0A0D3BZY0_BRAOL; Uncharacterized protein
TrEMBLA0A3P6C0234e-99A0A3P6C023_BRAOL; Uncharacterized protein
STRINGBo4g139270.11e-100(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38391457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77570.12e-23Winged helix-turn-helix transcription repressor DNA-binding