PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013633417.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YB
Protein Properties Length: 138aa    MW: 15243.4 Da    PI: 4.513
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013633417.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB117.85.3e-371895180
           NF-YB  1 vreqdrflPianvsrimkkvlPanakisk.daketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyv 80
                    v+eqd +lPian+srimk++lP +  i+k dak+tvqecvsef   +tseasdkcq+ekrkt+ng+dllw ++tlGfedy+
  XP_013633417.1 18 VKEQDXYLPIANISRIMKRALPPQXEIGKeDAKDTVQECVSEF---ITSEASDKCQKEKRKTVNGEDLLWVVTTLGFEDYL 95
                    589************************9747***********7...69********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.7E-331896IPR009072Histone-fold
SuperFamilySSF471131.89E-242199IPR009072Histone-fold
PfamPF008087.2E-192486IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MADPPSSXSA GGESGGWVKE QDXYLPIANI SRIMKRALPP QXEIGKEDAK DTVQECVSEF  60
ITSEASDKCQ KEKRKTVNGE DLLWVVTTLG FEDYLPGTLE AAFTSSPHLF QSFYNSNTLV  120
VVVGTRHDRE LIGSFQLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-311894179Transcription factor HapC (Eurofung)
4g92_B2e-311894179Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. Predominantly expressed in leaves, flowers and siliques. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013633417.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1891921e-109AC189192.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB002P20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013633417.12e-97PREDICTED: LOW QUALITY PROTEIN: nuclear transcription factor Y subunit B-1
SwissprotQ9SLG03e-47NFYB1_ARATH; Nuclear transcription factor Y subunit B-1
TrEMBLA0A1J3DT132e-45A0A1J3DT13_NOCCA; Nuclear transcription factor Y subunit B-1
TrEMBLA0A1J3FIT82e-45A0A1J3FIT8_NOCCA; Nuclear transcription factor Y subunit B-1
STRINGXP_006411113.14e-46(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.33e-43nuclear factor Y, subunit B1