PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013633543.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 344aa    MW: 38077.5 Da    PI: 6.7103
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013633543.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.45.9e-09186233455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++iN ++  L+el+P +    +k    a +L + +++++sLq
  XP_013633543.1 186 SHSLAERARREKINARMKLLQELVPGC----DKIQGTALVLDEIINHVQSLQ 233
                     8*************************9....889****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.79E-9180237No hitNo description
SuperFamilySSF474591.83E-15180251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.684182232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-15182250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6186233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-8188238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MDLSGRFGAR SGNGVPFREV TGLESLHLGG GDEFRQMVLP ENGGGFTALL ELPPTRAVEL  60
LHSSSSSSSQ ATLHSVGTLT FPSNPILMER AARFSVIATE QNPNGNISGE TTTSSVPSNE  120
HIKTEPAETE TSDQAAVEKQ NNRCGKRKDF DKKVKSSTKK KSKSSEENEK LPYVHVRARR  180
GQATDSHSLA ERARREKINA RMKLLQELVP GCDKIQGTAL VLDEIINHVQ SLQRQVEMLS  240
MRLASVNPRI DFNLDTILAS ENGSLMDGSF NGTTMQLAWP HQVMETEQSY HHRQLQQPPP  300
QQWPFDGLNQ PVWGREENQD HGNDHNSLMV GSASLHPNQV KMEL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013633543.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527280.0AK352728.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-C12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013633543.10.0PREDICTED: transcription factor bHLH60-like isoform X2
SwissprotQ3EAI11e-170BH060_ARATH; Transcription factor bHLH60
TrEMBLA0A3P6C2Z70.0A0A3P6C2Z7_BRAOL; Uncharacterized protein
TrEMBLM4DDN50.0M4DDN5_BRARP; Uncharacterized protein
STRINGBra014603.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.21e-163bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]