PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013633827.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 433aa    MW: 48803.5 Da    PI: 4.9543
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013633827.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.92.8e-11232273854
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      Er RR + N++f+ L++l+P++     +K++ a+i+ ++++YIk+L
  XP_013633827.1 232 TERERRVHFNDRFSDLKSLIPNP-----TKNDRASIVGEVIDYIKEL 273
                     59*********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.176224273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.29E-13226288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-8230279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-11232285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-8232273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.23E-10233278No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MENLNTDFVT NAEERESLYE EMACFDSAEV TAESGAGPPP QTLVAGSTSN SNCSVDVEEL  60
PEFHLSPQDC PQPSSTPLQF HINTLPPPPP CDNQYQNNNI NLIHQMSHDQ QQHANWDNNG  120
YQDFVNLGPN SSTTPDLLSL LHLPRCSLPQ SMLPNSFSDF MSSSSAAAVM YDPLFHLNFP  180
LQTRDQQRNN SCFLGVEDQI QMDGFDNGVI EFSSGGNNRK GRGSGKSRTF PTERERRVHF  240
NDRFSDLKSL IPNPTKNDRA SIVGEVIDYI KELLRTIEDL KMLVEKKKFG RFRSKKRGRV  300
GGEEEEQEGD NVVYRPKSEV EQSCFNNNKA LRCSWLRRKS KVTEVDVRII DDEVTIKVVQ  360
KKKINCLLFT TRVLDQLQLD LQHVAGGQIG EHYSFLFNTK ICEGSCVYAS GIADTVMEVV  420
EKQYMEAVPA NGY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013633827.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2516950.0AF251695.1 Arabidopsis thaliana putative transcription factor BHLH10 mRNA, complete cds.
GenBankAK2285920.0AK228592.1 Arabidopsis thaliana mRNA for putative transcription factor BHLH10, complete cds, clone: RAFL15-38-K03.
GenBankBT0057110.0BT005711.1 Arabidopsis thaliana clone RAFL15-38-K03 (R50165) putative bHLH protein (At2g31220) mRNA, complete cds.
GenBankBT0086080.0BT008608.1 Arabidopsis thaliana clone U50165 putative bHLH protein (At2g31220) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013633827.10.0PREDICTED: transcription factor bHLH10-like isoform X1
SwissprotQ84TK10.0BH010_ARATH; Transcription factor bHLH10
TrEMBLA0A0D3BT850.0A0A0D3BT85_BRAOL; Uncharacterized protein
TrEMBLA0A3P6CFQ40.0A0A3P6CFQ4_BRAOL; Uncharacterized protein
STRINGBo4g052460.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31220.11e-160bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]