PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013633933.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 412aa MW: 46432 Da PI: 6.9657

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013633933.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.7	9.4e-32	88	141	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +F++ave+LGG+++AtPk +l+lm+vkgL+++hvkSHLQ+YR+ XP_013633933.1 88 PRLRWTPELHLCFLQAVERLGGPDRATPKLVLQLMNVKGLSIAHVKSHLQMYRS 141 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.1E-30	84	142	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.321	84	144	IPR017930	Myb domain
SuperFamily	SSF46689	3.94E-16	85	143	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.7E-24	88	143	IPR006447	Myb domain, plants
Pfam	PF00249	1.0E-9	89	140	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MTPSSQSSEN SKTCPSNNFK ATTTKEDDDK DEEEEEEEEE DEEERSADQS PSSNSYVEES 60 GSQHHHNNND QIKKKGGSVR PYNRSKTPRL RWTPELHLCF LQAVERLGGP DRATPKLVLQ 120 LMNVKGLSIA HVKSHLQMYR SKKTDDLNQG DQGFSFEHGA GYTYNLSQLP MLQSFDQGPS 180 TSLGYGGGSW IDHRRQVYRS PWRGLTARDN TRTRQTLFSS QLGERFLGVS NSILDDKNKT 240 ISFRTNSREA AHASNGIGEA VPRSHSSFLE GMKTFNKSWG QSFPSNPNPS MPSKRQDHTA 300 VTLNFHQSDN PRVGEETEND LKRKRLLLSG DYNKSNQDLD LCLSLKVPPT HNNLGECLLE 360 EGEKEHEDSK RLSLSLSSSS LSQHGRAIRK EDQNDHKKRK ISVFASPLDL TL

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MTPSSQSSEN SKTCPSNNFK ATTTKEDDDK DEEEEEEEEE DEEERSADQS PSSNSYVEES  60
GSQHHHNNND QIKKKGGSVR PYNRSKTPRL RWTPELHLCF LQAVERLGGP DRATPKLVLQ  120
LMNVKGLSIA HVKSHLQMYR SKKTDDLNQG DQGFSFEHGA GYTYNLSQLP MLQSFDQGPS  180
TSLGYGGGSW IDHRRQVYRS PWRGLTARDN TRTRQTLFSS QLGERFLGVS NSILDDKNKT  240
ISFRTNSREA AHASNGIGEA VPRSHSSFLE GMKTFNKSWG QSFPSNPNPS MPSKRQDHTA  300
VTLNFHQSDN PRVGEETEND LKRKRLLLSG DYNKSNQDLD LCLSLKVPPT HNNLGECLLE  360
EGEKEHEDSK RLSLSLSSSS LSQHGRAIRK EDQNDHKKRK ISVFASPLDL TL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-17	89	143	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-17	89	143	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-17	89	143	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-17	89	143	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013633933.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232572	0.0	AC232572.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS005G02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013633933.1	0.0	PREDICTED: uncharacterized protein LOC106339633 isoform X2
TrEMBL	A0A0D3C5C8	0.0	A0A0D3C5C8_BRAOL; Uncharacterized protein
STRING	Bo4g188940.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	0.0	G2-like family protein